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mmu_circAnk2_1109
Basic information of circular RNA
PanCircBase ID:
mmu_circAnk2_1109
mm39_Chr. Position ID:
chr3|126775448|126810662|-
Gene name:
Ank2
Transcript:
ENSMUST00000182078.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
24,23,22,21,20,19,18,17,16
Exon/intron offsets:
0,6344,16053,17077,20878,22145,29054,31439,35016
Genomic length:
35214
Exon/intron sizes in nt:
14,57,39,99,99,99,91,90,00,000
Flanking exon/introns:
chr3:126770596-126775448|chr3:126810662-126816940
Splice length:
1109
Other database IDs:
circAtlas: mmu-Ank2_0149
circAtlas: hsa-ANK2_0052, CIRCpedia: HSA_CIRCpedia_124098
Human Ortholog IDs:
Mature spliced Sequence:
GAGGAGCAGACACCTTTACACATTGCCTCCAGGCTGGGGAAGACGGAAATTGTCCAGCTGCTTCTACAGCATATGGCTCACCCCGATGCAGCCACTACAAATGGGTACACACCACTACACATCTCTGCTCGGGAAGGACAGGTAGACGTGGCCTCTGTCCTGCTGGAAGCGGGAGCAGCCCATTCCTTAGCGACCAAGAAGGGCTTCACTCCCCTGCATGTAGCAGCCAAGTATGGAAGCCTGGATGTGGCAAAACTTCTCTTGCAACGTCGTGCAGCCGCAGATTCAGCAGGGAAGAATGGCTATACTCCCTTACACATTGCTGCCAAGAAGAATCAGATGCAGATAGCTTCCACACTACTGAACTATGGGGCCGAGACTAACACTGTGACAAAGCAAGGGGTCACTCCACTGCATCTGGCCTCACAAGAGGGGCACACAGACATGGTCACCTTGCTTCTGGACAAAGGAGCCAATATCCACATGTCAACCAAGAGTGGACTCACATCCTTACACCTTGCAGCCCAAGAAGATAAGGTGAACGTTGCGGACATTCTCACCAAACACGGGGCCGATCGGGATGCCTACACAAAGCTTGGTTACACACCTTTGATCGTGGCCTGTCACTATGGAAATGTGAAAATGGTCAACTTTCTTCTGAAACAGGGAGCAAATGTCAATGCGAAAACCAAGAATGGCTACACACCTTTGCACCAAGCTGCCCAGCAGGGCCACACACACATCATTAATGTCCTGCTCCAGCACGGGGCCAAGCCTAATGCTACTACTGCGAATGGTAACACGGCCCTGGCGATTGCTAAGCGGCTGGGCTACATCTCCGTGGTTGACACCCTGAAGGTTGTGACTGAAGAGGTCACCACCACTACCACGACTATCACGGAAAAACATAAGCTAAATGTTCCTGAGACAATGACGGAGGTCCTTGATGTTTCTGATGAAGAGGGTGATGACACTGTGACAGGTGATGGGGGAGAATACCTCAGGCCAGAAGATCTCAAGGAGCTCGGAGATGACTCACTGCCCAGCAGTCAGTTCCTGGATGGCATGAACTACCTTCGGTACAGTCTGGAGGGAGGAAGATCCGACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGGAGCTCGGAGATGACTCA
59.74
AATTTCCGTCTTCCCCAGCC
60.32
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGAGCTCGGAGATGACTCAC
59.62
AATTTCCGTCTTCCCCAGCC
60.32
141
PCR template sequence:
AAGATCTCAAGGAGCTCGGAGATGACTCACTGCCCAGCAGTCAGTTCCTGGATGGCATGAACTACCTTCGGTACAGTCTGGAGGGAGGAAGATCCGACAGGAGGAGCAGACACCTTTACACATTGCCTCCAGGCTGGGGAAGACGGAAATTGTCCAGCTGCTTCTACAGCATATGGCTCACCCCGATGCAGCCACTACAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
19
Interacting miRNAs (#binding sites)
mmu-miR-23b-3p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-222-3p(1), mmu-miR-196a-5p(1), mmu-miR-23a-3p(1), mmu-miR-214-3p(1), mmu-miR-128-3p(1), mmu-miR-494-3p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-370-3p(1), mmu-miR-34b-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-190b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GAAGATCCGACAGGAGGAGCAGACAC
siRNA sets
TGTCTGCTCCTCCTGTCGG, GTGTCTGCTCCTCCTGTCG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANK2_1109_ORF_1
1.1332
0.288420816
0.998530459
1182
ORF sequence:
ATGGCTCACCCCGATGCAGCCACTACAAATGGGTACACACCACTACACATCTCTGCTCGGGAAGGACAGGTAGACGTGGCCTCTGTCCTGCTGGAAGCGGGAGCAGCCCATTCCTTAGCGACCAAGAAGGGCTTCACTCCCCTGCATGTAGCAGCCAAGTATGGAAGCCTGGATGTGGCAAAACTTCTCTTGCAACGTCGTGCAGCCGCAGATTCAGCAGGGAAGAATGGCTATACTCCCTTACACATTGCTGCCAAGAAGAATCAGATGCAGATAGCTTCCACACTACTGAACTATGGGGCCGAGACTAACACTGTGACAAAGCAAGGGGTCACTCCACTGCATCTGGCCTCACAAGAGGGGCACACAGACATGGTCACCTTGCTTCTGGACAAAGGAGCCAATATCCACATGTCAACCAAGAGTGGACTCACATCCTTACACCTTGCAGCCCAAGAAGATAAGGTGAACGTTGCGGACATTCTCACCAAACACGGGGCCGATCGGGATGCCTACACAAAGCTTGGTTACACACCTTTGATCGTGGCCTGTCACTATGGAAATGTGAAAATGGTCAACTTTCTTCTGAAACAGGGAGCAAATGTCAATGCGAAAACCAAGAATGGCTACACACCTTTGCACCAAGCTGCCCAGCAGGGCCACACACACATCATTAATGTCCTGCTCCAGCACGGGGCCAAGCCTAATGCTACTACTGCGAATGGTAACACGGCCCTGGCGATTGCTAAGCGGCTGGGCTACATCTCCGTGGTTGACACCCTGAAGGTTGTGACTGAAGAGGTCACCACCACTACCACGACTATCACGGAAAAACATAAGCTAAATGTTCCTGAGACAATGACGGAGGTCCTTGATGTTTCTGATGAAGAGGGTGATGACACTGTGACAGGTGATGGGGGAGAATACCTCAGGCCAGAAGATCTCAAGGAGCTCGGAGATGACTCACTGCCCAGCAGTCAGTTCCTGGATGGCATGAACTACCTTCGGTACAGTCTGGAGGGAGGAAGATCCGACAGGAGGAGCAGACACCTTTACACATTGCCTCCAGGCTGGGGAAGACGGAAATTGTCCAGCTGCTTCTACAGCATATGGCTCACCCCGATGCAGCCACTACAAATGGGTACACACCACTACACATCTCTGCTCGGGAAGGACAGGTAG
Peptide sequence:
MAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSLDVAKLLLQRRAAADSAGKNGYTPLHIAAKKNQMQIASTLLNYGAETNTVTKQGVTPLHLASQEGHTDMVTLLLDKGANIHMSTKSGLTSLHLAAQEDKVNVADILTKHGADRDAYTKLGYTPLIVACHYGNVKMVNFLLKQGANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGAKPNATTANGNTALAIAKRLGYISVVDTLKVVTEEVTTTTTTITEKHKLNVPETMTEVLDVSDEEGDDTVTGDGGEYLRPEDLKELGDDSLPSSQFLDGMNYLRYSLEGGRSDRRSRHLYTLPPGWGRRKLSSCFYSIWLTPMQPLQMGTHHYTSLLGKDR
IRESfinder result
IRESfinder score
0.344971545
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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