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mmu_circAnapc5_565
Basic information of circular RNA
PanCircBase ID:
mmu_circAnapc5_565
mm39_Chr. Position ID:
chr5|122932479|122940967|-
Gene name:
Anapc5
Transcript:
ENSMUST00000086216.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
12,11,10,9,8
Exon/intron offsets:
0,4922,6034,7713,8406
Genomic length:
8488
Exon/intron sizes in nt:
75,136,182,90,82
Flanking exon/introns:
chr5:122931621-122932479|chr5:122940967-122944307
Splice length:
565
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TCAACAGGCAGAGCTCGCCCTGCAGGAGGCAATTAGGATTGCCCAGGAGTCCAACGATCACGTGTGTCTGCAGCACTGTTTGAGCTGGCTTTATGTGCTGGGGCAGAAGAGAGCCGATAGCTATGTTCTGCTGGAGCACTCTGTGAAGAAAGCAGTACATTTTGGGTTACCGTACCTCGCCTCCCTGGGAATACAGTCCCTTGTTCAACAGAGAGCTTTTGCTGGGAAGACGGCCAACAAACTGATGGATGCCCTAAAGGACTCTGACCTCCTGCACTGGAAACACAGCCTGTCAGAACTTATCGATATCAGCATTGCACAGAAAACGGCCATCTGGAGGCTGTACGGCCGCAGCACCATGGCACTGCAACAAGCCCAGATGTTGCTGAGCATGAACAGCCTGGAGTCGCTGAATGCGGGTGTGCAGCAGAACAATACTGAGTCCTTTGCCGTCGCTCTCTGCCATCTTGCAGAGCTCCATGCAGAACAGGGCTGTTTTGCGGCTGCTGGTGAAGTATTAAAGCACTTGAAGGACCGATTTCCACCCAACAGTCAGCACGCCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGCTCCATGCAGAACAGG
59.75
GCTCAAACAGTGCTGCAGAC
60.04
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGCTCCATGCAGAACAGG
59.75
TGGACTCCTGGGCAATCCTA
59.96
147
PCR template sequence:
TCTTGCAGAGCTCCATGCAGAACAGGGCTGTTTTGCGGCTGCTGGTGAAGTATTAAAGCACTTGAAGGACCGATTTCCACCCAACAGTCAGCACGCCCAGTCAACAGGCAGAGCTCGCCCTGCAGGAGGCAATTAGGATTGCCCAGGAGTCCAACGATCACGTGTGTCTGCAGCACTGTTTGAGCTGGCTTTATGTGCTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-155-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-339-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCAGCACGCCCAGTCAACAGGCAGAG
siRNA sets
TGTTGACTGGGCGTGCTGA, CTGTTGACTGGGCGTGCTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANAPC5_565_ORF_1
1.094
0.282590218
0.62164643
357
ORF sequence:
ATGGATGCCCTAAAGGACTCTGACCTCCTGCACTGGAAACACAGCCTGTCAGAACTTATCGATATCAGCATTGCACAGAAAACGGCCATCTGGAGGCTGTACGGCCGCAGCACCATGGCACTGCAACAAGCCCAGATGTTGCTGAGCATGAACAGCCTGGAGTCGCTGAATGCGGGTGTGCAGCAGAACAATACTGAGTCCTTTGCCGTCGCTCTCTGCCATCTTGCAGAGCTCCATGCAGAACAGGGCTGTTTTGCGGCTGCTGGTGAAGTATTAAAGCACTTGAAGGACCGATTTCCACCCAACAGTCAGCACGCCCAGTCAACAGGCAGAGCTCGCCCTGCAGGAGGCAATTAG
Peptide sequence:
MDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLESLNAGVQQNNTESFAVALCHLAELHAEQGCFAAAGEVLKHLKDRFPPNSQHAQSTGRARPAGGN
IRESfinder result
IRESfinder score
0.448974088
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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