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mmu_circAnapc5_311
Basic information of circular RNA
PanCircBase ID:
mmu_circAnapc5_311
mm39_Chr. Position ID:
chr5|122926364|122929818|-
Gene name:
Anapc5
Transcript:
ENSMUST00000086216.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
16,15
Exon/intron offsets:
0,3306
Genomic length:
3454
Exon/intron sizes in nt:
1,63,148
Flanking exon/introns:
chr5:122926081-122926364|chr5:122929818-122929889
Splice length:
311
Other database IDs:
circAtlas: mmu-Apc5_0015
circBase: hsa_circ_0028964, CIRCpedia: HSA_CIRCpedia_7178
Human Ortholog IDs:
Mature spliced Sequence:
TGTCCTCCTATCGGTGGCAGAGCTGTACTGGCGATCTTCGTCCCCGACCATCGCCATGCCTGTGCTCCTGGAAGCTCTGGCCCTCTCCAAAGAATACCGATTGCAGTACTTGGCCTCCGAAACTGTGCTCAACTTGGCTTATGCCCAGCTCATCCTTGGAATCCCGGAACAGGCCTTAACCCTTCTCCACATGGCTATCGAGCCCATCCTAGCCGACGGGGCTGTCCTGGACAAAGGTCGTGCCATGTTCTTAGTGTCCAAGTGCCAAGTGGCTTCGGCAGCGTCCTATGACCCAGTGAAGAAAGCGGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGTCCTGGACAAAGGTCGTG
59.89
CAGAGCTTCCAGGAGCACAG
60.39
168
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGTCCTGGACAAAGGTCGT
59.61
CAGAGCTTCCAGGAGCACAG
60.39
169
PCR template sequence:
GCCGACGGGGCTGTCCTGGACAAAGGTCGTGCCATGTTCTTAGTGTCCAAGTGCCAAGTGGCTTCGGCAGCGTCCTATGACCCAGTGAAGAAAGCGGAAGTGTCCTCCTATCGGTGGCAGAGCTGTACTGGCGATCTTCGTCCCCGACCATCGCCATGCCTGTGCTCCTGGAAGCTCTGGCCCTCTCCAAAGAATACCGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-96-5p(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AAGAAAGCGGAAGTGTCCTCCTATCG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANAPC5_311_ORF_1
0.9104
0.223317928
0.61951804
435
ORF sequence:
ATGCCTGTGCTCCTGGAAGCTCTGGCCCTCTCCAAAGAATACCGATTGCAGTACTTGGCCTCCGAAACTGTGCTCAACTTGGCTTATGCCCAGCTCATCCTTGGAATCCCGGAACAGGCCTTAACCCTTCTCCACATGGCTATCGAGCCCATCCTAGCCGACGGGGCTGTCCTGGACAAAGGTCGTGCCATGTTCTTAGTGTCCAAGTGCCAAGTGGCTTCGGCAGCGTCCTATGACCCAGTGAAGAAAGCGGAAGTGTCCTCCTATCGGTGGCAGAGCTGTACTGGCGATCTTCGTCCCCGACCATCGCCATGCCTGTGCTCCTGGAAGCTCTGGCCCTCTCCAAAGAATACCGATTGCAGTACTTGGCCTCCGAAACTGTGCTCAACTTGGCTTATGCCCAGCTCATCCTTGGAATCCCGGAACAGGCCTTAA
Peptide sequence:
MPVLLEALALSKEYRLQYLASETVLNLAYAQLILGIPEQALTLLHMAIEPILADGAVLDKGRAMFLVSKCQVASAASYDPVKKAEVSSYRWQSCTGDLRPRPSPCLCSWKLWPSPKNTDCSTWPPKLCSTWLMPSSSLESRNRP
IRESfinder result
IRESfinder score
0.283005677
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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