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mmu_circAlg14_287
Basic information of circular RNA
PanCircBase ID:
mmu_circAlg14_287
mm39_Chr. Position ID:
chr3|121092252|121113860|+
Gene name:
Alg14
Transcript:
ENSMUST00000039442.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
2,3
Exon/intron offsets:
0,21476
Genomic length:
21608
Exon/intron sizes in nt:
1,55,132
Flanking exon/introns:
chr3:121085632-121092252|chr3:121113860-121155204
Splice length:
287
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGGACACACCACTGAGATCTTGAGGCTGGTTGGAAGCTTGTCCAATGCCTATTCACCAAGGCATTATGTCATTGCTGAGTCTGATGAAATGAGTGCCAAGAAAATCCATTCTCTTGAAGAACTCTCTCGAGCCCAGAATGACTCTACTACTGAATACCCCAAGTACCACCTTCACCGAATTCCGAGAAGCCGGGAGGTTCGGCAGTCCTGGCTCTCCTCCGTGTTCACTACCTTCTACTCCATGTGGTTCTCCTTCCCACTGGTTCTCCGAATAAAGCCAGATTTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAGGTTCGGCAGTCCTGG
59.73
AGGCATTGGACAAGCTTCCA
59.89
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGAGGTTCGGCAGTCCTG
59.73
AGGCATTGGACAAGCTTCCA
59.89
145
PCR template sequence:
AAGCCGGGAGGTTCGGCAGTCCTGGCTCTCCTCCGTGTTCACTACCTTCTACTCCATGTGGTTCTCCTTCCCACTGGTTCTCCGAATAAAGCCAGATTTGGTGGACACACCACTGAGATCTTGAGGCTGGTTGGAAGCTTGTCCAATGCCTATTCACCAAGGCATTATGTCATTGCTGAGTCTGATGAAATGAGTGCCAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-96-5p(1), mmu-miR-532-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AAAGCCAGATTTGGTGGACACACCAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCALG14_287_ORF_1
0.5457
0.217812
0.148146909
222
ORF sequence:
ATGAGTGCCAAGAAAATCCATTCTCTTGAAGAACTCTCTCGAGCCCAGAATGACTCTACTACTGAATACCCCAAGTACCACCTTCACCGAATTCCGAGAAGCCGGGAGGTTCGGCAGTCCTGGCTCTCCTCCGTGTTCACTACCTTCTACTCCATGTGGTTCTCCTTCCCACTGGTTCTCCGAATAAAGCCAGATTTGGTGGACACACCACTGAGATCTTGA
Peptide sequence:
MSAKKIHSLEELSRAQNDSTTEYPKYHLHRIPRSREVRQSWLSSVFTTFYSMWFSFPLVLRIKPDLVDTPLRS
IRESfinder result
IRESfinder score
0.639941044
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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