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mmu_circAldh7a1_1297
Basic information of circular RNA
PanCircBase ID:
mmu_circAldh7a1_1297
mm39_Chr. Position ID:
chr18|56664561|56693901|-
Gene name:
Aldh7a1
Transcript:
ENSMUST00000174518.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
15
Exon/intron indexes:
18,17,16,15,14,13,12,11,10,9,8,7,6,5,4
Exon/intron offsets:
0,221,491,998,2700,5714,7211,10735,13475,15414,16957,18806,19670,27732,29286
Genomic length:
29340
Exon/intron sizes in nt:
74,98,117,107,85,95,42,98,78,45,133,124,81,66,54
Flanking exon/introns:
chr18:56661424-56664561|chr18:56693901-56695104
Splice length:
1297
Other database IDs:
CIRCpedia: MMU_CIRCpedia_218756
Human Ortholog IDs:
Mature spliced Sequence:
GTAATTACGACCTATTGTCCTGCTAACAATGAGCCAATAGCAAGAGTCCGACAGGCCAGCCTGAAGGACTATGAAGAAACCATCGGGAAAGCCAAGAAAGCCTGGAACATCTGGGCAGATATTCCTGCCCCAAAACGCGGAGAAATAGTCAGAAAGATTGGCGATGCCTTCCGGGAGAAGATCCAACTACTGGGAAGACTGGTGTCTTTGGAGATGGGGAAAATCCTGGTGGAAGGAATAGGCGAGGTTCAGGAGTACGTGGACGTCTGCGATTATGCTGCTGGCTTGTCGAGGATGATCGGGGGACCCACCTTGCCTTCTGAAAGACCCGGCCATGCTCTCATCGAAATGTGGAATCCCTTAGGCTTGGTGGGAATCATCACTGCCTTCAATTTCCCCGTGGCTGTGTTTGGCTGGAACAATGCCATAGCTCTGATCACAGGGAATGTCTGCCTTTGGAAAGGAGCACCGACTACGTCCCTCGTTAGTGTGGCTGTCACAAAGATCATAGCCCAGGTTTTGGAGGACAACCTGCTGCCCGGTGCCATTTGTTCCCTGGTTTGTGGTGGAGCAGATATCGGCACAACGATGGCCAGAGATGAGCGTGTGAACCTGCTGTCCTTCACTGGGAGCACTCAGGTGGGGAAGGAGGTGGCCCTCATGGTGCAGGAGAGGTTTGGGAAAAGCTTGTTGGAGCTTGGAGGAAACAATGCCATTATTGCTTTCGAGGACGCGGACCTCAGCTTGGTTGTTCCGTCAGTTCTGTTTGCCGCCGTGGGAACAGCTGGGCAAAGGTGTACCACTGTGAGGAGACTGTTTTTGCACGAAAGCATCCATAATGAAGTTGTGGACAGACTGAGAAGTGCCTACTCACAGATCCGTGTTGGGAACCCCTGGGACCCCAATATCCTCTATGGACCGCTCCATACCAAACAGGCAGTGAGCATGTTTGTGAGAGCCGTGGAAGAAGCCAAGAAACAAGGGGGCACAGTGGTCTATGGGGGCAAGGTCATGGACCACCCTGGCAATTACGTGGAACCCACCATTGTGACCGGTCTTGCCCATGATGCGCCCATTGTTCACCAGGAGACTTTTGCCCCAATCCTCTATGTCTTCAAATTCCAGGATGAAGAAGAGGTCTTTGAATGGAACAATGAAGTAAAACAGGGACTTTCAAGTAGTATCTTTACCAAAGATTTGGGCAGAATCTTCCGCTGGCTTGGACCTAAAGGTTCCGACTGTGGCATCGTGAACGTCAATATTCCTACCAGCGGGGCTGAGATTGGTGGTGCGTTTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAAGGTTCCGACTGTGGCAT
59.89
CATAGTCCTTCAGGCTGGCC
60.18
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGGTTCCGACTGTGGCATC
60.32
CATAGTCCTTCAGGCTGGCC
60.18
142
PCR template sequence:
TTGGGCAGAATCTTCCGCTGGCTTGGACCTAAAGGTTCCGACTGTGGCATCGTGAACGTCAATATTCCTACCAGCGGGGCTGAGATTGGTGGTGCGTTTGGTAATTACGACCTATTGTCCTGCTAACAATGAGCCAATAGCAAGAGTCCGACAGGCCAGCCTGAAGGACTATGAAGAAACCATCGGGAAAGCCAAGAAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
14
Interacting miRNAs (#binding sites)
mmu-miR-15a-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-31-5p(1), mmu-miR-216a-5p(1), mmu-miR-132-3p(1), mmu-miR-495-3p(1), mmu-miR-214-3p(1), mmu-miR-212-3p(1), mmu-miR-183-5p(1), mmu-miR-541-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-207(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GGTGGTGCGTTTGGTAATTACGACCT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCALDH7A1_1297_ORF_1
1.2183
0.261324688
0.997625175
1110
ORF sequence:
ATGGGGAAAATCCTGGTGGAAGGAATAGGCGAGGTTCAGGAGTACGTGGACGTCTGCGATTATGCTGCTGGCTTGTCGAGGATGATCGGGGGACCCACCTTGCCTTCTGAAAGACCCGGCCATGCTCTCATCGAAATGTGGAATCCCTTAGGCTTGGTGGGAATCATCACTGCCTTCAATTTCCCCGTGGCTGTGTTTGGCTGGAACAATGCCATAGCTCTGATCACAGGGAATGTCTGCCTTTGGAAAGGAGCACCGACTACGTCCCTCGTTAGTGTGGCTGTCACAAAGATCATAGCCCAGGTTTTGGAGGACAACCTGCTGCCCGGTGCCATTTGTTCCCTGGTTTGTGGTGGAGCAGATATCGGCACAACGATGGCCAGAGATGAGCGTGTGAACCTGCTGTCCTTCACTGGGAGCACTCAGGTGGGGAAGGAGGTGGCCCTCATGGTGCAGGAGAGGTTTGGGAAAAGCTTGTTGGAGCTTGGAGGAAACAATGCCATTATTGCTTTCGAGGACGCGGACCTCAGCTTGGTTGTTCCGTCAGTTCTGTTTGCCGCCGTGGGAACAGCTGGGCAAAGGTGTACCACTGTGAGGAGACTGTTTTTGCACGAAAGCATCCATAATGAAGTTGTGGACAGACTGAGAAGTGCCTACTCACAGATCCGTGTTGGGAACCCCTGGGACCCCAATATCCTCTATGGACCGCTCCATACCAAACAGGCAGTGAGCATGTTTGTGAGAGCCGTGGAAGAAGCCAAGAAACAAGGGGGCACAGTGGTCTATGGGGGCAAGGTCATGGACCACCCTGGCAATTACGTGGAACCCACCATTGTGACCGGTCTTGCCCATGATGCGCCCATTGTTCACCAGGAGACTTTTGCCCCAATCCTCTATGTCTTCAAATTCCAGGATGAAGAAGAGGTCTTTGAATGGAACAATGAAGTAAAACAGGGACTTTCAAGTAGTATCTTTACCAAAGATTTGGGCAGAATCTTCCGCTGGCTTGGACCTAAAGGTTCCGACTGTGGCATCGTGAACGTCAATATTCCTACCAGCGGGGCTGAGATTGGTGGTGCGTTTGGTAATTACGACCTATTGTCCTGCTAA
Peptide sequence:
MGKILVEGIGEVQEYVDVCDYAAGLSRMIGGPTLPSERPGHALIEMWNPLGLVGIITAFNFPVAVFGWNNAIALITGNVCLWKGAPTTSLVSVAVTKIIAQVLEDNLLPGAICSLVCGGADIGTTMARDERVNLLSFTGSTQVGKEVALMVQERFGKSLLELGGNNAIIAFEDADLSLVVPSVLFAAVGTAGQRCTTVRRLFLHESIHNEVVDRLRSAYSQIRVGNPWDPNILYGPLHTKQAVSMFVRAVEEAKKQGGTVVYGGKVMDHPGNYVEPTIVTGLAHDAPIVHQETFAPILYVFKFQDEEEVFEWNNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGNYDLLSC
IRESfinder result
IRESfinder score
0.461391934
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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