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mmu_circAkap7_560
Basic information of circular RNA
PanCircBase ID:
mmu_circAkap7_560
mm39_Chr. Position ID:
chr10|25115523|25159939|-
Gene name:
Akap7
Transcript:
ENSMUST00000041984.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
6,5,4,3
Exon/intron offsets:
0,27682,31879,44267
Genomic length:
44416
Exon/intron sizes in nt:
1,13,16,11,37,149
Flanking exon/introns:
chr10:25096656-25115523|chr10:25159939-25165496
Splice length:
560
Other database IDs:
circAtlas: hsa-AKAP7_0008, CIRCpedia: HSA_CIRCpedia_158384
Human Ortholog IDs:
Mature spliced Sequence:
GCCCTGATGTACCTCAAGCAAACCCAAAGAGAAGCAAAGAAGAAGAAGAAGATAGAGGCGACAAGAATGATCATGTGAAGAAGAGGAAAAAAGCCAAAAAAGATTATCAGCCCAACTATTTCCTGTCCATTCCGATCACCAACAAAAAGATTACAACCGGAATTAAAGTCTTGCAAAATTCGATACTACAGCAGGATAAGCGACTGACCAAAGCCATGGTGGGCGACGGCTCCTTTCATATTACCTTGCTAGTGATGCAGTTATTAAACGAAGATGAAGTAAATATCGGTACCGATGCACTTTTGGAATTGAAGCCATTCGTTGAGGAGATCCTTGAAGGGAAACACTTGGCTTTGCCCTTCCAAGGGATTGGCACTTTCCAAGGTCAGGTTGGCTTTGTGAAGCTGGCAGATGGAGACCATGTTAGCGCACTCCTGGAGATAGCAGAGACTGCGAAAAGAACATTTCGGGAAAAAGGCATCCTAGCTGGAGAAAGCAGAACTTTTAAGCCCCACCTGACCTTTATGAAGCTGTCCAAAGCACCGATGCTCAGGAAGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGGGAAAAAGGCATCCTAGC
58.97
TCACATGATCATTCTTGTCGCC
59.06
171
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGGGAAAAAGGCATCCTAGC
58.97
CACATGATCATTCTTGTCGCCT
59.06
170
PCR template sequence:
AACATTTCGGGAAAAAGGCATCCTAGCTGGAGAAAGCAGAACTTTTAAGCCCCACCTGACCTTTATGAAGCTGTCCAAAGCACCGATGCTCAGGAAGAAGGCCCTGATGTACCTCAAGCAAACCCAAAGAGAAGCAAAGAAGAAGAAGAAGATAGAGGCGACAAGAATGATCATGTGAAGAAGAGGAAAAAAGCCAAAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-106a-5p(2), mmu-miR-93-5p(2), mmu-miR-135a-5p(2), mmu-miR-9-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-18a-5p(1), mmu-miR-217-5p(1), mmu-miR-370-3p(1), mmu-miR-129-5p(1), mmu-miR-350-3p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
GCTCAGGAAGAAGGCCCTGATGTACC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAKAP7_560_ORF_1
1.0226
0.216651297
0.638919366
423
ORF sequence:
ATGGTGGGCGACGGCTCCTTTCATATTACCTTGCTAGTGATGCAGTTATTAAACGAAGATGAAGTAAATATCGGTACCGATGCACTTTTGGAATTGAAGCCATTCGTTGAGGAGATCCTTGAAGGGAAACACTTGGCTTTGCCCTTCCAAGGGATTGGCACTTTCCAAGGTCAGGTTGGCTTTGTGAAGCTGGCAGATGGAGACCATGTTAGCGCACTCCTGGAGATAGCAGAGACTGCGAAAAGAACATTTCGGGAAAAAGGCATCCTAGCTGGAGAAAGCAGAACTTTTAAGCCCCACCTGACCTTTATGAAGCTGTCCAAAGCACCGATGCTCAGGAAGAAGGCCCTGATGTACCTCAAGCAAACCCAAAGAGAAGCAAAGAAGAAGAAGAAGATAGAGGCGACAAGAATGATCATGTGA
Peptide sequence:
MVGDGSFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGKHLALPFQGIGTFQGQVGFVKLADGDHVSALLEIAETAKRTFREKGILAGESRTFKPHLTFMKLSKAPMLRKKALMYLKQTQREAKKKKKIEATRMIM
IRESfinder result
IRESfinder score
0.452279401
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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