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mmu_circAhi1_728
Basic information of circular RNA
PanCircBase ID:
mmu_circAhi1_728
mm39_Chr. Position ID:
chr10|20855278|20864583|+
Gene name:
Ahi1
Transcript:
ENSMUST00000105525.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
11,12,13,14,15
Exon/intron offsets:
0,1944,4925,7590,9164
Genomic length:
9305
Exon/intron sizes in nt:
230,107,119,131,141
Flanking exon/introns:
chr10:20853019-20855278|chr10:20864583-20876404
Splice length:
728
Other database IDs:
circBase: mmu_circ_0002112, CIRCpedia: MMU_CIRCpedia_13115, circAtlas: mmu-Ahi1_0010
Human Ortholog IDs:
Mature spliced Sequence:
AGTTTGGAAGAATGAAATCAATAGCACGAGCACGTTCAGAGTCTTACCTCACCCCTCCTTCGTCTACACGGCTAAATTCCACCCAGCCACACGGGAGCTGGTGGTTACAGGATGCTACGACTCTATGATAAGGATTTGGAAAATTGATGCAAGGGAGGATGCTGCCATATTAGTGCGCCAGTTGGATGTGCACAAGAGCTTTGTCAACTCCATCTGTTTTGACGATGAAGGTCACCACATGTACTCAGGAGACTGCATCGGGGTCATCGTTGTCTGGGACACGTACGTCAAAGTGAATGATGTGCAACACTCCGTGCGCCACTGGACGATAAATAAGGAAATTAAGGAAACTGAATTCAGGGGAGTTCCAATAAGTTACCTGGAGGTTCATCCCAATGGAAAGCGTTTGCTAATCCACACCAAAGACAGTACTCTGAGGATTATGGACCTGCGGATATTGGCAGCCAGGAAATTTGTGGGTGCAGCAAATTACCGTGAGAAGATCCATAGCACCTTGACGCCGTGCGGGACTCTGCTCTTTTCTGGGAGTGAGGATGGGATAGTATACGTTTGGAACCCAGAGACAGGAGAACAAGTGGCAATGTACTCTGACCTGCCATTCAAGTCCACAATCCGAGACATCTCTTACCACCCCCTGGAGAATATGGTTGCCTTCTGTGCCTTTGGACAGAGCGAGCCGATTCTTCTTTATATTTATGATTTCCAGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTCTTACCACCCCCTGGAGA
59.96
TAGACGAAGGAGGGGTGAGG
60.03
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTCTTACCACCCCCTGGAG
59.96
TAGACGAAGGAGGGGTGAGG
60.03
153
PCR template sequence:
ACAATCCGAGACATCTCTTACCACCCCCTGGAGAATATGGTTGCCTTCTGTGCCTTTGGACAGAGCGAGCCGATTCTTCTTTATATTTATGATTTCCAGGAGTTTGGAAGAATGAAATCAATAGCACGAGCACGTTCAGAGTCTTACCTCACCCCTCCTTCGTCTACACGGCTAAATTCCACCCAGCCACACGGGAGCTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-499-5p(1), mmu-miR-540-3p(1), mmu-miR-670-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TATGATTTCCAGGAGTTTGGAAGAAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAHI1_728_ORF_1
0.8588
0.187640955
0.914467009
732
ORF sequence:
ATGATAAGGATTTGGAAAATTGATGCAAGGGAGGATGCTGCCATATTAGTGCGCCAGTTGGATGTGCACAAGAGCTTTGTCAACTCCATCTGTTTTGACGATGAAGGTCACCACATGTACTCAGGAGACTGCATCGGGGTCATCGTTGTCTGGGACACGTACGTCAAAGTGAATGATGTGCAACACTCCGTGCGCCACTGGACGATAAATAAGGAAATTAAGGAAACTGAATTCAGGGGAGTTCCAATAAGTTACCTGGAGGTTCATCCCAATGGAAAGCGTTTGCTAATCCACACCAAAGACAGTACTCTGAGGATTATGGACCTGCGGATATTGGCAGCCAGGAAATTTGTGGGTGCAGCAAATTACCGTGAGAAGATCCATAGCACCTTGACGCCGTGCGGGACTCTGCTCTTTTCTGGGAGTGAGGATGGGATAGTATACGTTTGGAACCCAGAGACAGGAGAACAAGTGGCAATGTACTCTGACCTGCCATTCAAGTCCACAATCCGAGACATCTCTTACCACCCCCTGGAGAATATGGTTGCCTTCTGTGCCTTTGGACAGAGCGAGCCGATTCTTCTTTATATTTATGATTTCCAGGAGTTTGGAAGAATGAAATCAATAGCACGAGCACGTTCAGAGTCTTACCTCACCCCTCCTTCGTCTACACGGCTAAATTCCACCCAGCCACACGGGAGCTGGTGGTTACAGGATGCTACGACTCTATGA
Peptide sequence:
MIRIWKIDAREDAAILVRQLDVHKSFVNSICFDDEGHHMYSGDCIGVIVVWDTYVKVNDVQHSVRHWTINKEIKETEFRGVPISYLEVHPNGKRLLIHTKDSTLRIMDLRILAARKFVGAANYREKIHSTLTPCGTLLFSGSEDGIVYVWNPETGEQVAMYSDLPFKSTIRDISYHPLENMVAFCAFGQSEPILLYIYDFQEFGRMKSIARARSESYLTPPSSTRLNSTQPHGSWWLQDATTL
IRESfinder result
IRESfinder score
0.591165978
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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