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mmu_circAhi1_2876
Basic information of circular RNA
PanCircBase ID:
mmu_circAhi1_2876
mm39_Chr. Position ID:
chr10|20835510|20917140|+
Gene name:
Ahi1
Transcript:
ENSMUST00000105525.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
18
Exon/intron indexes:
2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19
Exon/intron offsets:
0,3453,4061,5905,6314,9376,11237,12412,17385,19768,21712,24693,27358,28932,40894,48140,58301,81574
Genomic length:
81630
Exon/intron sizes in nt:
469,170,220,193,96,186,153,133,124,230,107,119,131,141,200,27,121,56
Flanking exon/introns:
chr10:20828651-20835510|chr10:20917140-20930879
Splice length:
2876
Other database IDs:
circAtlas: mmu-Ahi1_0066
circBase: hsa_circ_0077918
Human Ortholog IDs:
Mature spliced Sequence:
CCTGTTACCCTCAAAGTAACCTTCTGGCTACCTTAGAACTAAAATTGGCACTAAAAGCCTAGAGAAGTGAGCAGCACGTGAAGATTCAGAGGACAATGTTAGTGTAGAGCCATACAAACAAGAAAAGACAAGTAAACACTACCCAGATCGCACAGGAAATGGAGCCAGAAACTCCAGAGAAGGTGGATTCTGCACAAGAGAAAGTCAGAGGCAAGACCCCGACAGCAGATGATTCAGATGACAGCCGAGAAAAGACTGGCATAGAAGAGAAAGGAGAACTGACCGACGCCTATCAGCTGCAGGTAGCTGAAGAAATGGCAAAGGAGATCAAGAAGAAAATAAGAAAGAAGCTAAAGGAACAGCTGACCTACTTTCCTCCAGACACTCTATTGCATGACGACAAGCTGGCCAGTGAAAAAAGAAAGAAGAAGAAGAAGAAAGTGCCAGTGCCCACTAAGCCTGAGTCAAGTCCCTCAGATGTCTGTGACAGTGCAGTTGAAGGGGAACAAAAGAAAGAAGGTACCCCTGAGGACTCTCAGCACATGGAGGGAATCTGCTCGAGAGAGCAGGATGTGGATGCCACTGTGCCAGAGAACGCAAAGCCCAAACCCAAGAAGACAAAGAAGAAGACTAAAGCAGTTTCAAATGATAATGAAGACACTAATGGAGATGGTGTTCATGAGATAACAAGCCGAGACAGCCCAGTTCATCCCAAGTGCTTGCTGGATGATGACCTCGTCATGGGAGTCTACATTCACCGAACCGATAGACTTAAATCTGACTTTATGATTTCTCACCCAATGGTAAAGATCCATGTGGTTGATGAGCACACTGGCCAGTACGTCAAGAAAGATGACAGTGAACGTCCTGTTTCATCTTATTATGAGAAAGACAACGTGGACTATATTCTCCCTATTATGACACAGCCATATGACTTTAAAAAGCTAAAGTCAAGGCTTCCGGAGTGGGAGGAGCAAGTTATTTTTAATGAAAATTTTCCCTATTTGCTTCGAGAGTTTGAAGAATGTCCAAAAGTCATCCTGTTCTTTGAGATTCTTGACTTTTTAAGCATGGATGAAATCAAGAATAACTCTGAGGTTCAAAACCAAGAGTGTGGCTTTCGGAAAATTGCCTGGGCGTTTCTTAAGCTTCTGGGAGCCAATGGGAATGCAAACATCAACTCAAAACTTCGCCTGCAGCTCTACTACCCACCGACTAAGCCTCGATCCCAGCTAAATGTCGTCGAGGTTTTTGAATGGTGGTCCAAGTGTCCAAGAAATCGTTATCCATCAACATTGTATGTAACCGTACGAGGATTGAAAGTCCCGGACTGTATAAAGCCATCTTACCGCTCTATGATGGCTCTCCAGGAGGAAAGGGGTACACCAGTGTACTGTGAACGTCACCGTGAAACAAGTTCCGTGGACACAGAACCTGGACTAGAAGATTCAAAGGAGGAAGTGAAGTGGAAACGTCTGCCTGGCCAGGCCTGTCGTATCCCAAACAAGCATCTCTTCTCACTGAATGCTGGAGAACGCGGCTGTTTCTGTCTTGATTTCTCTCACAATGGAAGGATATTAGCAGCAGCCTGTGCCAGCCGAGACGGATATCCGATTATATTATATGAAATTCCTTCTGGACGTTTTATGAGAGAATTGTGTGGCCACCTCAATATCATTTATGATCTCGACTGGTCAAAAGACGATCGCTATCTCGTTACTTCATCCTCTGACGGCACTGCCAGAGTTTGGAAGAATGAAATCAATAGCACGAGCACGTTCAGAGTCTTACCTCACCCCTCCTTCGTCTACACGGCTAAATTCCACCCAGCCACACGGGAGCTGGTGGTTACAGGATGCTACGACTCTATGATAAGGATTTGGAAAATTGATGCAAGGGAGGATGCTGCCATATTAGTGCGCCAGTTGGATGTGCACAAGAGCTTTGTCAACTCCATCTGTTTTGACGATGAAGGTCACCACATGTACTCAGGAGACTGCATCGGGGTCATCGTTGTCTGGGACACGTACGTCAAAGTGAATGATGTGCAACACTCCGTGCGCCACTGGACGATAAATAAGGAAATTAAGGAAACTGAATTCAGGGGAGTTCCAATAAGTTACCTGGAGGTTCATCCCAATGGAAAGCGTTTGCTAATCCACACCAAAGACAGTACTCTGAGGATTATGGACCTGCGGATATTGGCAGCCAGGAAATTTGTGGGTGCAGCAAATTACCGTGAGAAGATCCATAGCACCTTGACGCCGTGCGGGACTCTGCTCTTTTCTGGGAGTGAGGATGGGATAGTATACGTTTGGAACCCAGAGACAGGAGAACAAGTGGCAATGTACTCTGACCTGCCATTCAAGTCCACAATCCGAGACATCTCTTACCACCCCCTGGAGAATATGGTTGCCTTCTGTGCCTTTGGACAGAGCGAGCCGATTCTTCTTTATATTTATGATTTCCAGGTAGCCCAGCAGGAGGCTGAAATGTTGAAACGCTATAGTGGGACACTCCCGTTGCCTGGGATACATCAGAGTGAGGATGCTTTATGCACCTGCCCTAAGCTGCCCCAGCAGGGCTCTTTTCAGATTGATGAATTTGTCAACACTGAAAATAGTTCATCAAGAAAGATTCAACTTGTGAAACAGAGACTCGAAACTGTCACAGAGGTGATACGATCCTGTGCTGCAAAAGTCAACAAAAATCTCTCAATGACTTCGCCACCACCAGGCCCTGCAAAGAAGCCCAGGGTAAAGCAGTCGTTCGTGCTGACCACTGATGAGATCATACATCAGTTTGGACTCCCCCAGACTGCATTTATCAGCATAGAGAGAGGGCCTTTTGTGCGCCATGTTGATCCACCACCAATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTTTGGACTCCCCCAGACTG
59.96
TTCACGTGCTGCTCACTTCT
59.9
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTTTGGACTCCCCCAGACTG
59.96
TCTTCACGTGCTGCTCACTT
59.9
160
PCR template sequence:
GACCACTGATGAGATCATACATCAGTTTGGACTCCCCCAGACTGCATTTATCAGCATAGAGAGAGGGCCTTTTGTGCGCCATGTTGATCCACCACCAATGCCTGTTACCCTCAAAGTAACCTTCTGGCTACCTTAGAACTAAAATTGGCACTAAAAGCCTAGAGAAGTGAGCAGCACGTGAAGATTCAGAGGACAATGTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
18
Interacting miRNAs (#binding sites)
mmu-miR-136-5p(2), mmu-miR-370-3p(2), mmu-miR-199a-5p(1), mmu-miR-135a-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-122-5p(1), mmu-miR-149-5p(1), mmu-miR-34b-5p(1), mmu-miR-499-5p(1), mmu-miR-5101(1), mmu-miR-539-5p(1), mmu-miR-335-3p(1), mmu-miR-3470b(1), mmu-miR-540-3p(1), mmu-miR-670-5p(1), mmu-miR-697(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCACCACCAATGCCTGTTACCCTCA
siRNA sets
TGAGGGTAACAGGCATTGG, TAACAGGCATTGGTGGTGG, GAGGGTAACAGGCATTGGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAHI1_2876_ORF_1
1.052
0.227900107
0.999999972
2754
ORF sequence:
ATGGAGCCAGAAACTCCAGAGAAGGTGGATTCTGCACAAGAGAAAGTCAGAGGCAAGACCCCGACAGCAGATGATTCAGATGACAGCCGAGAAAAGACTGGCATAGAAGAGAAAGGAGAACTGACCGACGCCTATCAGCTGCAGGTAGCTGAAGAAATGGCAAAGGAGATCAAGAAGAAAATAAGAAAGAAGCTAAAGGAACAGCTGACCTACTTTCCTCCAGACACTCTATTGCATGACGACAAGCTGGCCAGTGAAAAAAGAAAGAAGAAGAAGAAGAAAGTGCCAGTGCCCACTAAGCCTGAGTCAAGTCCCTCAGATGTCTGTGACAGTGCAGTTGAAGGGGAACAAAAGAAAGAAGGTACCCCTGAGGACTCTCAGCACATGGAGGGAATCTGCTCGAGAGAGCAGGATGTGGATGCCACTGTGCCAGAGAACGCAAAGCCCAAACCCAAGAAGACAAAGAAGAAGACTAAAGCAGTTTCAAATGATAATGAAGACACTAATGGAGATGGTGTTCATGAGATAACAAGCCGAGACAGCCCAGTTCATCCCAAGTGCTTGCTGGATGATGACCTCGTCATGGGAGTCTACATTCACCGAACCGATAGACTTAAATCTGACTTTATGATTTCTCACCCAATGGTAAAGATCCATGTGGTTGATGAGCACACTGGCCAGTACGTCAAGAAAGATGACAGTGAACGTCCTGTTTCATCTTATTATGAGAAAGACAACGTGGACTATATTCTCCCTATTATGACACAGCCATATGACTTTAAAAAGCTAAAGTCAAGGCTTCCGGAGTGGGAGGAGCAAGTTATTTTTAATGAAAATTTTCCCTATTTGCTTCGAGAGTTTGAAGAATGTCCAAAAGTCATCCTGTTCTTTGAGATTCTTGACTTTTTAAGCATGGATGAAATCAAGAATAACTCTGAGGTTCAAAACCAAGAGTGTGGCTTTCGGAAAATTGCCTGGGCGTTTCTTAAGCTTCTGGGAGCCAATGGGAATGCAAACATCAACTCAAAACTTCGCCTGCAGCTCTACTACCCACCGACTAAGCCTCGATCCCAGCTAAATGTCGTCGAGGTTTTTGAATGGTGGTCCAAGTGTCCAAGAAATCGTTATCCATCAACATTGTATGTAACCGTACGAGGATTGAAAGTCCCGGACTGTATAAAGCCATCTTACCGCTCTATGATGGCTCTCCAGGAGGAAAGGGGTACACCAGTGTACTGTGAACGTCACCGTGAAACAAGTTCCGTGGACACAGAACCTGGACTAGAAGATTCAAAGGAGGAAGTGAAGTGGAAACGTCTGCCTGGCCAGGCCTGTCGTATCCCAAACAAGCATCTCTTCTCACTGAATGCTGGAGAACGCGGCTGTTTCTGTCTTGATTTCTCTCACAATGGAAGGATATTAGCAGCAGCCTGTGCCAGCCGAGACGGATATCCGATTATATTATATGAAATTCCTTCTGGACGTTTTATGAGAGAATTGTGTGGCCACCTCAATATCATTTATGATCTCGACTGGTCAAAAGACGATCGCTATCTCGTTACTTCATCCTCTGACGGCACTGCCAGAGTTTGGAAGAATGAAATCAATAGCACGAGCACGTTCAGAGTCTTACCTCACCCCTCCTTCGTCTACACGGCTAAATTCCACCCAGCCACACGGGAGCTGGTGGTTACAGGATGCTACGACTCTATGATAAGGATTTGGAAAATTGATGCAAGGGAGGATGCTGCCATATTAGTGCGCCAGTTGGATGTGCACAAGAGCTTTGTCAACTCCATCTGTTTTGACGATGAAGGTCACCACATGTACTCAGGAGACTGCATCGGGGTCATCGTTGTCTGGGACACGTACGTCAAAGTGAATGATGTGCAACACTCCGTGCGCCACTGGACGATAAATAAGGAAATTAAGGAAACTGAATTCAGGGGAGTTCCAATAAGTTACCTGGAGGTTCATCCCAATGGAAAGCGTTTGCTAATCCACACCAAAGACAGTACTCTGAGGATTATGGACCTGCGGATATTGGCAGCCAGGAAATTTGTGGGTGCAGCAAATTACCGTGAGAAGATCCATAGCACCTTGACGCCGTGCGGGACTCTGCTCTTTTCTGGGAGTGAGGATGGGATAGTATACGTTTGGAACCCAGAGACAGGAGAACAAGTGGCAATGTACTCTGACCTGCCATTCAAGTCCACAATCCGAGACATCTCTTACCACCCCCTGGAGAATATGGTTGCCTTCTGTGCCTTTGGACAGAGCGAGCCGATTCTTCTTTATATTTATGATTTCCAGGTAGCCCAGCAGGAGGCTGAAATGTTGAAACGCTATAGTGGGACACTCCCGTTGCCTGGGATACATCAGAGTGAGGATGCTTTATGCACCTGCCCTAAGCTGCCCCAGCAGGGCTCTTTTCAGATTGATGAATTTGTCAACACTGAAAATAGTTCATCAAGAAAGATTCAACTTGTGAAACAGAGACTCGAAACTGTCACAGAGGTGATACGATCCTGTGCTGCAAAAGTCAACAAAAATCTCTCAATGACTTCGCCACCACCAGGCCCTGCAAAGAAGCCCAGGGTAAAGCAGTCGTTCGTGCTGACCACTGATGAGATCATACATCAGTTTGGACTCCCCCAGACTGCATTTATCAGCATAGAGAGAGGGCCTTTTGTGCGCCATGTTGATCCACCACCAATGCCTGTTACCCTCAAAGTAACCTTCTGGCTACCTTAG
Peptide sequence:
MEPETPEKVDSAQEKVRGKTPTADDSDDSREKTGIEEKGELTDAYQLQVAEEMAKEIKKKIRKKLKEQLTYFPPDTLLHDDKLASEKRKKKKKKVPVPTKPESSPSDVCDSAVEGEQKKEGTPEDSQHMEGICSREQDVDATVPENAKPKPKKTKKKTKAVSNDNEDTNGDGVHEITSRDSPVHPKCLLDDDLVMGVYIHRTDRLKSDFMISHPMVKIHVVDEHTGQYVKKDDSERPVSSYYEKDNVDYILPIMTQPYDFKKLKSRLPEWEEQVIFNENFPYLLREFEECPKVILFFEILDFLSMDEIKNNSEVQNQECGFRKIAWAFLKLLGANGNANINSKLRLQLYYPPTKPRSQLNVVEVFEWWSKCPRNRYPSTLYVTVRGLKVPDCIKPSYRSMMALQEERGTPVYCERHRETSSVDTEPGLEDSKEEVKWKRLPGQACRIPNKHLFSLNAGERGCFCLDFSHNGRILAAACASRDGYPIILYEIPSGRFMRELCGHLNIIYDLDWSKDDRYLVTSSSDGTARVWKNEINSTSTFRVLPHPSFVYTAKFHPATRELVVTGCYDSMIRIWKIDAREDAAILVRQLDVHKSFVNSICFDDEGHHMYSGDCIGVIVVWDTYVKVNDVQHSVRHWTINKEIKETEFRGVPISYLEVHPNGKRLLIHTKDSTLRIMDLRILAARKFVGAANYREKIHSTLTPCGTLLFSGSEDGIVYVWNPETGEQVAMYSDLPFKSTIRDISYHPLENMVAFCAFGQSEPILLYIYDFQVAQQEAEMLKRYSGTLPLPGIHQSEDALCTCPKLPQQGSFQIDEFVNTENSSSRKIQLVKQRLETVTEVIRSCAAKVNKNLSMTSPPPGPAKKPRVKQSFVLTTDEIIHQFGLPQTAFISIERGPFVRHVDPPPMPVTLKVTFWLP
IRESfinder result
IRESfinder score
0.514227877
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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