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mmu_circAhi1_1620
Basic information of circular RNA
PanCircBase ID:
mmu_circAhi1_1620
mm39_Chr. Position ID:
chr10|20835510|20848055|+
Gene name:
Ahi1
Transcript:
ENSMUST00000105525.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
2,3,4,5,6,7,8,9
Exon/intron offsets:
0,3453,4061,5905,6314,9376,11237,12412
Genomic length:
12545
Exon/intron sizes in nt:
46,91,70,22,01,93,96,10,00,00,000
Flanking exon/introns:
chr10:20828651-20835510|chr10:20848055-20852895
Splice length:
1620
Other database IDs:
CIRCpedia: MMU_CIRCpedia_215489, circAtlas: mmu-Ahi1_0024
Human Ortholog IDs:
Mature spliced Sequence:
CCTGTTACCCTCAAAGTAACCTTCTGGCTACCTTAGAACTAAAATTGGCACTAAAAGCCTAGAGAAGTGAGCAGCACGTGAAGATTCAGAGGACAATGTTAGTGTAGAGCCATACAAACAAGAAAAGACAAGTAAACACTACCCAGATCGCACAGGAAATGGAGCCAGAAACTCCAGAGAAGGTGGATTCTGCACAAGAGAAAGTCAGAGGCAAGACCCCGACAGCAGATGATTCAGATGACAGCCGAGAAAAGACTGGCATAGAAGAGAAAGGAGAACTGACCGACGCCTATCAGCTGCAGGTAGCTGAAGAAATGGCAAAGGAGATCAAGAAGAAAATAAGAAAGAAGCTAAAGGAACAGCTGACCTACTTTCCTCCAGACACTCTATTGCATGACGACAAGCTGGCCAGTGAAAAAAGAAAGAAGAAGAAGAAGAAAGTGCCAGTGCCCACTAAGCCTGAGTCAAGTCCCTCAGATGTCTGTGACAGTGCAGTTGAAGGGGAACAAAAGAAAGAAGGTACCCCTGAGGACTCTCAGCACATGGAGGGAATCTGCTCGAGAGAGCAGGATGTGGATGCCACTGTGCCAGAGAACGCAAAGCCCAAACCCAAGAAGACAAAGAAGAAGACTAAAGCAGTTTCAAATGATAATGAAGACACTAATGGAGATGGTGTTCATGAGATAACAAGCCGAGACAGCCCAGTTCATCCCAAGTGCTTGCTGGATGATGACCTCGTCATGGGAGTCTACATTCACCGAACCGATAGACTTAAATCTGACTTTATGATTTCTCACCCAATGGTAAAGATCCATGTGGTTGATGAGCACACTGGCCAGTACGTCAAGAAAGATGACAGTGAACGTCCTGTTTCATCTTATTATGAGAAAGACAACGTGGACTATATTCTCCCTATTATGACACAGCCATATGACTTTAAAAAGCTAAAGTCAAGGCTTCCGGAGTGGGAGGAGCAAGTTATTTTTAATGAAAATTTTCCCTATTTGCTTCGAGAGTTTGAAGAATGTCCAAAAGTCATCCTGTTCTTTGAGATTCTTGACTTTTTAAGCATGGATGAAATCAAGAATAACTCTGAGGTTCAAAACCAAGAGTGTGGCTTTCGGAAAATTGCCTGGGCGTTTCTTAAGCTTCTGGGAGCCAATGGGAATGCAAACATCAACTCAAAACTTCGCCTGCAGCTCTACTACCCACCGACTAAGCCTCGATCCCAGCTAAATGTCGTCGAGGTTTTTGAATGGTGGTCCAAGTGTCCAAGAAATCGTTATCCATCAACATTGTATGTAACCGTACGAGGATTGAAAGTCCCGGACTGTATAAAGCCATCTTACCGCTCTATGATGGCTCTCCAGGAGGAAAGGGGTACACCAGTGTACTGTGAACGTCACCGTGAAACAAGTTCCGTGGACACAGAACCTGGACTAGAAGATTCAAAGGAGGAAGTGAAGTGGAAACGTCTGCCTGGCCAGGCCTGTCGTATCCCAAACAAGCATCTCTTCTCACTGAATGCTGGAGAACGCGGCTGTTTCTGTCTTGATTTCTCTCACAATGGAAGGATATTAGCAGCAGCCTGTGCCAGCCGAGACGGATATCCGATTATAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AACGCGGCTGTTTCTGTCTT
60.81
TTCACGTGCTGCTCACTTCT
59.9
169
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AACGCGGCTGTTTCTGTCTT
60.81
TCTTCACGTGCTGCTCACTT
59.9
171
PCR template sequence:
CTGAATGCTGGAGAACGCGGCTGTTTCTGTCTTGATTTCTCTCACAATGGAAGGATATTAGCAGCAGCCTGTGCCAGCCGAGACGGATATCCGATTATATCCTGTTACCCTCAAAGTAACCTTCTGGCTACCTTAGAACTAAAATTGGCACTAAAAGCCTAGAGAAGTGAGCAGCACGTGAAGATTCAGAGGACAATGTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-136-5p(2), mmu-miR-199a-5p(1), mmu-miR-135a-5p(1), mmu-miR-149-5p(1), mmu-miR-5101(1), mmu-miR-539-5p(1), mmu-miR-335-3p(1), mmu-miR-697(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TATCCGATTATATCCTGTTACCCTCA
siRNA sets
GGTAACAGGATATAATCGG, GTAACAGGATATAATCGGA, TAACAGGATATAATCGGAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAHI1_1620_ORF_1
1.015
0.248918443
0.999812981
1524
ORF sequence:
ATGGAGCCAGAAACTCCAGAGAAGGTGGATTCTGCACAAGAGAAAGTCAGAGGCAAGACCCCGACAGCAGATGATTCAGATGACAGCCGAGAAAAGACTGGCATAGAAGAGAAAGGAGAACTGACCGACGCCTATCAGCTGCAGGTAGCTGAAGAAATGGCAAAGGAGATCAAGAAGAAAATAAGAAAGAAGCTAAAGGAACAGCTGACCTACTTTCCTCCAGACACTCTATTGCATGACGACAAGCTGGCCAGTGAAAAAAGAAAGAAGAAGAAGAAGAAAGTGCCAGTGCCCACTAAGCCTGAGTCAAGTCCCTCAGATGTCTGTGACAGTGCAGTTGAAGGGGAACAAAAGAAAGAAGGTACCCCTGAGGACTCTCAGCACATGGAGGGAATCTGCTCGAGAGAGCAGGATGTGGATGCCACTGTGCCAGAGAACGCAAAGCCCAAACCCAAGAAGACAAAGAAGAAGACTAAAGCAGTTTCAAATGATAATGAAGACACTAATGGAGATGGTGTTCATGAGATAACAAGCCGAGACAGCCCAGTTCATCCCAAGTGCTTGCTGGATGATGACCTCGTCATGGGAGTCTACATTCACCGAACCGATAGACTTAAATCTGACTTTATGATTTCTCACCCAATGGTAAAGATCCATGTGGTTGATGAGCACACTGGCCAGTACGTCAAGAAAGATGACAGTGAACGTCCTGTTTCATCTTATTATGAGAAAGACAACGTGGACTATATTCTCCCTATTATGACACAGCCATATGACTTTAAAAAGCTAAAGTCAAGGCTTCCGGAGTGGGAGGAGCAAGTTATTTTTAATGAAAATTTTCCCTATTTGCTTCGAGAGTTTGAAGAATGTCCAAAAGTCATCCTGTTCTTTGAGATTCTTGACTTTTTAAGCATGGATGAAATCAAGAATAACTCTGAGGTTCAAAACCAAGAGTGTGGCTTTCGGAAAATTGCCTGGGCGTTTCTTAAGCTTCTGGGAGCCAATGGGAATGCAAACATCAACTCAAAACTTCGCCTGCAGCTCTACTACCCACCGACTAAGCCTCGATCCCAGCTAAATGTCGTCGAGGTTTTTGAATGGTGGTCCAAGTGTCCAAGAAATCGTTATCCATCAACATTGTATGTAACCGTACGAGGATTGAAAGTCCCGGACTGTATAAAGCCATCTTACCGCTCTATGATGGCTCTCCAGGAGGAAAGGGGTACACCAGTGTACTGTGAACGTCACCGTGAAACAAGTTCCGTGGACACAGAACCTGGACTAGAAGATTCAAAGGAGGAAGTGAAGTGGAAACGTCTGCCTGGCCAGGCCTGTCGTATCCCAAACAAGCATCTCTTCTCACTGAATGCTGGAGAACGCGGCTGTTTCTGTCTTGATTTCTCTCACAATGGAAGGATATTAGCAGCAGCCTGTGCCAGCCGAGACGGATATCCGATTATATCCTGTTACCCTCAAAGTAACCTTCTGGCTACCTTAGAACTAAAATTGGCACTAAAAGCCTAG
Peptide sequence:
MEPETPEKVDSAQEKVRGKTPTADDSDDSREKTGIEEKGELTDAYQLQVAEEMAKEIKKKIRKKLKEQLTYFPPDTLLHDDKLASEKRKKKKKKVPVPTKPESSPSDVCDSAVEGEQKKEGTPEDSQHMEGICSREQDVDATVPENAKPKPKKTKKKTKAVSNDNEDTNGDGVHEITSRDSPVHPKCLLDDDLVMGVYIHRTDRLKSDFMISHPMVKIHVVDEHTGQYVKKDDSERPVSSYYEKDNVDYILPIMTQPYDFKKLKSRLPEWEEQVIFNENFPYLLREFEECPKVILFFEILDFLSMDEIKNNSEVQNQECGFRKIAWAFLKLLGANGNANINSKLRLQLYYPPTKPRSQLNVVEVFEWWSKCPRNRYPSTLYVTVRGLKVPDCIKPSYRSMMALQEERGTPVYCERHRETSSVDTEPGLEDSKEEVKWKRLPGQACRIPNKHLFSLNAGERGCFCLDFSHNGRILAAACASRDGYPIISCYPQSNLLATLELKLALKA
IRESfinder result
IRESfinder score
0.445253992
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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