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mmu_circAgps_248
Basic information of circular RNA
PanCircBase ID:
mmu_circAgps_248
mm39_Chr. Position ID:
chr2|75735202|75742022|+
Gene name:
Agps
Transcript:
ENSMUST00000047232.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
17,18,19
Exon/intron offsets:
0,4742,6762
Genomic length:
6820
Exon/intron sizes in nt:
90,100,58
Flanking exon/introns:
chr2:75733323-75735202|chr2:75742022-75756265
Splice length:
248
Other database IDs:
circBase: hsa_circ_0057186, circAtlas: hsa-AGPS_0028, CIRCpedia: HSA_CIRCpedia_38742
Human Ortholog IDs:
Mature spliced Sequence:
GGTTATAGATCTGTGTAGAAATGTAAAGGAGAGGATAAGAAGGGAATGCAAAGAAAGGGGAGTTCAGTTCGCACCTCTTTCTACGTGCAGGGTGACACAGACTTATGATGCAGGTGCATGTATCTACTTCTATTTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACCGTGTTTGAACACACTGAGGCAGCTGCTAGAGAGGAAATCCTTGCCAATGGAGGGAGCCTGTCACATCACCATGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CACTGAGGCAGCTGCTAGAG
60.18
GTGTCACCCTGCACGTAGAA
59.97
163
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTGAACACACTGAGGCAGCT
59.82
GTGTCACCCTGCACGTAGAA
59.97
170
PCR template sequence:
AGGGGAATTAGTGACCCACTGACCGTGTTTGAACACACTGAGGCAGCTGCTAGAGAGGAAATCCTTGCCAATGGAGGGAGCCTGTCACATCACCATGGAGGGTTATAGATCTGTGTAGAAATGTAAAGGAGAGGATAAGAAGGGAATGCAAAGAAAGGGGAGTTCAGTTCGCACCTCTTTCTACGTGCAGGGTGACACAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-211-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CATCACCATGGAGGGTTATAGATCTG
siRNA sets
ATCTATAACCCTCCATGGT,GATCTATAACCCTCCATGG,TATAACCCTCCATGGTGAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.729756938
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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