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mmu_circAgbl4_125
Basic information of circular RNA
PanCircBase ID:
mmu_circAgbl4_125
mm39_Chr. Position ID:
chr4|110437247|110437372|+
Gene name:
Agbl4
Transcript:
ENSMUST00000106589.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
125
Exon/intron sizes in nt:
125
Flanking exon/introns:
chr4:110255102-110437247|chr4:110437372-110812763
Splice length:
125
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAACCTCGGCCGGGTTGAGCAAGTCTCTGATTTTGAGTATGATCTGTTCATTAGGCCGGACACCTGTAATCCACGCTTCCGAGTCTGGTTCAACTTTACTGTTGAAAATGTGAAAGAATTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGTAATCCACGCTTCCGA
59.83
TCCGGCCTAATGAACAGATCA
58.88
123
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGTAATCCACGCTTCCGA
59.83
GTCCGGCCTAATGAACAGATCA
60.16
124
PCR template sequence:
CCTGTAATCCACGCTTCCGAGTCTGGTTCAACTTTACTGTTGAAAATGTGAAAGAATTGCAGGTAACCTCGGCCGGGTTGAGCAAGTCTCTGATTTTGAGTATGATCTGTTCATTAGGCCGGAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-434-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GAAAGAATTGCAGGTAACCTCGGCCG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.865242433
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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