top of page
mmu_circAdk_87
Basic information of circular RNA
PanCircBase ID:
mmu_circAdk_87
mm39_Chr. Position ID:
chr14|21473570|21473657|+
Gene name:
Adk
Transcript:
ENSMUST00000045376.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
87
Exon/intron sizes in nt:
87
Flanking exon/introns:
chr14:21431685-21473570|chr14:21473657-21497881
Splice length:
87
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AGAATGATGTCACTGCTTTTCCTGTCTTGGATCAAAACCAGGAAGAGATCATTGACACCAATGGAGCTGGAGATGCATTTGTTGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCAATGGAGCTGGAGATGC
60.11
TCCAAGACAGGAAAAGCAGTGA
59.83
62
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAATGGAGCTGGAGATGCA
60.11
TCCAAGACAGGAAAAGCAGTGA
59.83
61
PCR template sequence:
GAGATCATTGACACCAATGGAGCTGGAGATGCATTTGTTGGAGAGAATGATGTCACTGCTTTTCCTGTCTTGGATCAAAACCAGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-136-5p(1), mmu-miR-3065-5p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCATTTGTTGGAGAGAATGATGTCAC
siRNA sets
CATTCTCTCCAACAAATGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADK_87_ORF_1
1.2088
-0.005460155
0.143372399
171
ORF sequence:
ATGATGTCACTGCTTTTCCTGTCTTGGATCAAAACCAGGAAGAGATCATTGACACCAATGGAGCTGGAGATGCATTTGTTGGAGAGAATGATGTCACTGCTTTTCCTGTCTTGGATCAAAACCAGGAAGAGATCATTGACACCAATGGAGCTGGAGATGCATTTGTTGGAG
Peptide sequence:
MMSLLFLSWIKTRKRSLTPMELEMHLLERMMSLLFLSWIKTRKRSLTPMELEMHLLE
IRESfinder result
IRESfinder score
0.549277941
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page