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mmu_circAdk_691
Basic information of circular RNA
PanCircBase ID:
mmu_circAdk_691
mm39_Chr. Position ID:
chr14|21284900|21473657|+
Gene name:
Adk
Transcript:
ENSMUST00000045376.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
5,6,7,8,9,10
Exon/intron offsets:
0,5630,83180,134238,146670,188670
Genomic length:
188757
Exon/intron sizes in nt:
173,109,171,36,115,87
Flanking exon/introns:
chr14:21219946-21284900|chr14:21473657-21497881
Splice length:
691
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TGGTTGATTCAGGAGCCACACAAAGCAGCAACATTCTTTGGATGCATTGGGATAGATAAGTTTGGGGAGATCCTGAAGCGTAAGGCTGCTGACGCACATGTGGATGCTCATTACTATGAGCAGAACGAGCAGCCAACAGGAACTTGTGCTGCGTGTATCACTGGTGGCAACAGGTCCCTCGTTGCTAACCTTGCTGCCGCCAATTGTTACAAGAAAGAGAAGCACCTTGACCTGGAGCGGAACTGGGTGTTGGTAGAGAAAGCCAGAGTTTACTACATAGCTGGCTTTTTTCTCACAGTCTCCCCAGAGTCGGTATTGAAAGTGGCTCGCTATGCTGCCGAGAACAACAGGGTCTTCACTTTGAACCTGTCTGCACCGTTCATTAGCCAGTTCTTCAAGGAAGCCTTGATGGACGTCATGCCTTATGTTGATATCCTCTTTGGAAATGAGACGGAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAGACTAAAGACATTAAAGAAATAGCCAAAAAGGCGCAGGCTCTTCCAAAGGTGAACTCGAAGAGGCAGAGGACCGTGATCTTCACACAAGGGCGAGATGACACCATAGTGGCTGCAGAGAATGATGTCACTGCTTTTCCTGTCTTGGATCAAAACCAGGAAGAGATCATTGACACCAATGGAGCTGGAGATGCATTTGTTGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCTGCAGAGAATGATGTCA
59.72
TACGCTTCAGGATCTCCCCA
60.03
178
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGTGGCTGCAGAGAATGATGT
59.72
TACGCTTCAGGATCTCCCCA
60.03
180
PCR template sequence:
ATAGTGGCTGCAGAGAATGATGTCACTGCTTTTCCTGTCTTGGATCAAAACCAGGAAGAGATCATTGACACCAATGGAGCTGGAGATGCATTTGTTGGAGTGGTTGATTCAGGAGCCACACAAAGCAGCAACATTCTTTGGATGCATTGGGATAGATAAGTTTGGGGAGATCCTGAAGCGTAAGGCTGCTGACGCACATG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-210-3p(1), mmu-miR-148b-3p(1), mmu-miR-18a-5p(1), mmu-miR-10a-5p(1), mmu-miR-136-5p(1), mmu-miR-669d-5p(1), mmu-miR-452-3p(1), mmu-miR-3065-5p(1), mmu-miR-1904(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCATTTGTTGGAGTGGTTGATTCAGG
siRNA sets
AATCAACCACTCCAACAAA, TGAATCAACCACTCCAACA, CAACCACTCCAACAAATGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADK_691_ORF_1
1.157
0.254394292
0.970737472
774
ORF sequence:
ATGATGTCACTGCTTTTCCTGTCTTGGATCAAAACCAGGAAGAGATCATTGACACCAATGGAGCTGGAGATGCATTTGTTGGAGTGGTTGATTCAGGAGCCACACAAAGCAGCAACATTCTTTGGATGCATTGGGATAGATAAGTTTGGGGAGATCCTGAAGCGTAAGGCTGCTGACGCACATGTGGATGCTCATTACTATGAGCAGAACGAGCAGCCAACAGGAACTTGTGCTGCGTGTATCACTGGTGGCAACAGGTCCCTCGTTGCTAACCTTGCTGCCGCCAATTGTTACAAGAAAGAGAAGCACCTTGACCTGGAGCGGAACTGGGTGTTGGTAGAGAAAGCCAGAGTTTACTACATAGCTGGCTTTTTTCTCACAGTCTCCCCAGAGTCGGTATTGAAAGTGGCTCGCTATGCTGCCGAGAACAACAGGGTCTTCACTTTGAACCTGTCTGCACCGTTCATTAGCCAGTTCTTCAAGGAAGCCTTGATGGACGTCATGCCTTATGTTGATATCCTCTTTGGAAATGAGACGGAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAGACTAAAGACATTAAAGAAATAGCCAAAAAGGCGCAGGCTCTTCCAAAGGTGAACTCGAAGAGGCAGAGGACCGTGATCTTCACACAAGGGCGAGATGACACCATAGTGGCTGCAGAGAATGATGTCACTGCTTTTCCTGTCTTGGATCAAAACCAGGAAGAGATCATTGACACCAATGGAGCTGGAGATGCATTTGTTGGA
Peptide sequence:
MMSLLFLSWIKTRKRSLTPMELEMHLLEWLIQEPHKAATFFGCIGIDKFGEILKRKAADAHVDAHYYEQNEQPTGTCAACITGGNRSLVANLAAANCYKKEKHLDLERNWVLVEKARVYYIAGFFLTVSPESVLKVARYAAENNRVFTLNLSAPFISQFFKEALMDVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKAQALPKVNSKRQRTVIFTQGRDDTIVAAENDVTAFPVLDQNQEEIIDTNGAGDAFVG
IRESfinder result
IRESfinder score
0.542381892
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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