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mmu_circAdipor2_1120
Basic information of circular RNA
PanCircBase ID:
mmu_circAdipor2_1120
mm39_Chr. Position ID:
chr6|119334176|119347369|-
Gene name:
Adipor2
Transcript:
ENSMUST00000032272.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
7,6,5,4,3,2
Exon/intron offsets:
0,1706,2135,4612,8045,12934
Genomic length:
13193
Exon/intron sizes in nt:
194,188,187,172,120,259
Flanking exon/introns:
chr6:119332889-119334176|chr6:119347369-119394380
Splice length:
1120
Other database IDs:
circBase: mmu_circ_0013005, CIRCpedia: MMU_CIRCpedia_4722, circAtlas: mmu-Adipor2_0010
circBase: hsa_circ_0025004, circAtlas: hsa-ADIPOR2_0008, CIRCpedia: HSA_CIRCpedia_70522
Human Ortholog IDs:
Mature spliced Sequence:
GGTCAACTTACCATCCCTTAAAAATCCATTCTCCCAAGAAGAAGGGACAGAAAGAAAGACCACTTTGTAAGAAAGGCTTTGGTATCCCATGAACGAGCCAGCCAAACACCGATTGGGGTGCACCAGGACTCCAGAGCCAGATATACGGCTCAGAAAAGGGCACCAACTTGATGATACAAGGGGAAGTAATAATGACAACTACCAAGGAGATTTGGAGCCCAGCTTAGAGACACCTGTTTGTTCTTCCTATTATGAAAATAGCCCGGAGGAGCCCGAGTGTCATGATGACAATTCCCAGGAAGATGAAGGGTTTATGGGCATGTCCCCGCTCCTACAGGCCCATCATGCTATGGAACGAATGGAAGAGTTTGTTTGTAAGGTGTGGGAAGGCCGATGGCGAGTGATCCCTCACGATGTGCTACCGGATTGGCTTAAGGATAATGACTTCCTTCTCCATGGACACCGGCCTCCTATGCCTTCCTTTCGGGCCTGTTTTAAGAGCATTTTTAGAATACACACAGAGACGGGCAACATTTGGACACATCTCCTAGGTTGTGTATTCTTCCTGTGCCTGGGGATCTTTTATATGTTTCGCCCAAATATATCTTTTGTGGCCCCTCTGCAAGAGAAAGTGGTCTTTGGCTTGTTCTTCTTGGGAGCCATTCTCTGCCTTTCCTTTTCATGGCTCTTCCACACGGTGTACTGCCACTCAGAAGGGGTCTCCCGACTCTTCTCTAAATTGGATTACTCTGGTATTGCTCTTCTGATCATGGGAAGTTTTGTTCCTTGGCTTTATTATTCTTTCTACTGTAACCCACAACCTTGCTTCATCTACCTGATTGTCATCTGTGTGCTGGGCATTGCAGCCATTATCGTCTCTCAGTGGGACATGTTTGCCACCCCTCAGTATCGGGGGGTCAGAGCAGGAGTGTTCGTGGGCTTAGGCCTGAGTGGAATCATCCCTACCTTGCATTATGTCATCTCAGAAGGGTTCCTGAAGGCTGCCACCATAGGGCAGATAGGCTGGCTAATGCTTATGGCTAGCCTCTATATCACCGGAGCTGCCCTCTATGCGGCCCGTATCCCTGAGCGCTTCTTTCCTGGCAAATGTGACATCTGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGCTGGCTAATGCTTATGGC
59.4
CCCTTCTTCTTGGGAGAATGGA
59.42
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGCTGGCTAATGCTTATGGC
59.4
TCCCTTCTTCTTGGGAGAATGG
59.42
146
PCR template sequence:
AGGCTGGCTAATGCTTATGGCTAGCCTCTATATCACCGGAGCTGCCCTCTATGCGGCCCGTATCCCTGAGCGCTTCTTTCCTGGCAAATGTGACATCTGGGGTCAACTTACCATCCCTTAAAAATCCATTCTCCCAAGAAGAAGGGACAGAAAGAAAGACCACTTTGTAAGAAAGGCTTTGGTATCCCATGAACGAGCCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
14
Interacting miRNAs (#binding sites)
mmu-miR-23b-3p(1), mmu-miR-20b-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-205-5p(1), mmu-miR-335-5p(1), mmu-miR-23a-3p(1), mmu-miR-143-3p(1), mmu-miR-495-3p(1), mmu-miR-30d-5p(1), mmu-miR-149-5p(1), mmu-miR-433-3p(1), mmu-miR-494-3p(1), mmu-miR-383-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATGTGACATCTGGGGTCAACTTACCA
siRNA sets
TAAGTTGACCCCAGATGTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADIPOR2_1120_ORF_1
0.8675
0.110778202
0.987500508
1053
ORF sequence:
ATGAACGAGCCAGCCAAACACCGATTGGGGTGCACCAGGACTCCAGAGCCAGATATACGGCTCAGAAAAGGGCACCAACTTGATGATACAAGGGGAAGTAATAATGACAACTACCAAGGAGATTTGGAGCCCAGCTTAGAGACACCTGTTTGTTCTTCCTATTATGAAAATAGCCCGGAGGAGCCCGAGTGTCATGATGACAATTCCCAGGAAGATGAAGGGTTTATGGGCATGTCCCCGCTCCTACAGGCCCATCATGCTATGGAACGAATGGAAGAGTTTGTTTGTAAGGTGTGGGAAGGCCGATGGCGAGTGATCCCTCACGATGTGCTACCGGATTGGCTTAAGGATAATGACTTCCTTCTCCATGGACACCGGCCTCCTATGCCTTCCTTTCGGGCCTGTTTTAAGAGCATTTTTAGAATACACACAGAGACGGGCAACATTTGGACACATCTCCTAGGTTGTGTATTCTTCCTGTGCCTGGGGATCTTTTATATGTTTCGCCCAAATATATCTTTTGTGGCCCCTCTGCAAGAGAAAGTGGTCTTTGGCTTGTTCTTCTTGGGAGCCATTCTCTGCCTTTCCTTTTCATGGCTCTTCCACACGGTGTACTGCCACTCAGAAGGGGTCTCCCGACTCTTCTCTAAATTGGATTACTCTGGTATTGCTCTTCTGATCATGGGAAGTTTTGTTCCTTGGCTTTATTATTCTTTCTACTGTAACCCACAACCTTGCTTCATCTACCTGATTGTCATCTGTGTGCTGGGCATTGCAGCCATTATCGTCTCTCAGTGGGACATGTTTGCCACCCCTCAGTATCGGGGGGTCAGAGCAGGAGTGTTCGTGGGCTTAGGCCTGAGTGGAATCATCCCTACCTTGCATTATGTCATCTCAGAAGGGTTCCTGAAGGCTGCCACCATAGGGCAGATAGGCTGGCTAATGCTTATGGCTAGCCTCTATATCACCGGAGCTGCCCTCTATGCGGCCCGTATCCCTGAGCGCTTCTTTCCTGGCAAATGTGACATCTGGGGTCAACTTACCATCCCTTAA
Peptide sequence:
MNEPAKHRLGCTRTPEPDIRLRKGHQLDDTRGSNNDNYQGDLEPSLETPVCSSYYENSPEEPECHDDNSQEDEGFMGMSPLLQAHHAMERMEEFVCKVWEGRWRVIPHDVLPDWLKDNDFLLHGHRPPMPSFRACFKSIFRIHTETGNIWTHLLGCVFFLCLGIFYMFRPNISFVAPLQEKVVFGLFFLGAILCLSFSWLFHTVYCHSEGVSRLFSKLDYSGIALLIMGSFVPWLYYSFYCNPQPCFIYLIVICVLGIAAIIVSQWDMFATPQYRGVRAGVFVGLGLSGIIPTLHYVISEGFLKAATIGQIGWLMLMASLYITGAALYAARIPERFFPGKCDIWGQLTIP
IRESfinder result
IRESfinder score
0.606890723
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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