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mmu_circAdgrv1_731
Basic information of circular RNA
PanCircBase ID:
mmu_circAdgrv1_731
mm39_Chr. Position ID:
chr13|81721333|81726511|-
Gene name:
Adgrv1
Transcript:
ENSMUST00000095585.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
11,10,9
Exon/intron offsets:
0,1744,4848
Genomic length:
5178
Exon/intron sizes in nt:
22,41,77,330
Flanking exon/introns:
chr13:81716853-81721333|chr13:81726511-81726838
Splice length:
731
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CTTCTGTTCTACATTCAGGACAGCGATAATGTTTATGGAGAAATAGCCTTTTTTCCTGGGGAAAGCCAGAAGATTGAAAGCAGCCCTAGTGAGCGATCCTTATCCCTGAGTTTGGCGAGACGTGGGGGAAGTAAAGGAGACGTGAGGGTGATTTATTCTGCACTTTATATTCCTGCTGGAGCTATGGACCCCTTGCGAGCAAAAGATGGCATCTTAAATACATCTAGGAGAAGCAGCCTCCTTTTCCCAGAACAGAACCAACAAGTTTCTATAAAATTACCGATAAGGAATGATGCATTCCTCCAGAATGGGGCCCACTTCCTAGTGCAGTTGGAAGCTGTGGTGTTGGTGAACATATTCCCTCCGATTCCACCAGTAAGTCCCAGATTCGGAGAAATCAGAAATATTTCATTACTGGTTACCCCAGCCATTGCAAATGGAGAAATTGGCTTTCTTAGCAACCTTCCAATTATTTTGCATGAACCCAAAGATTCTTCTGCTGAGGTGGTATCTATCCCCTTGCATCGAGATGGAACTGATGGCCAGGCTACCGTGTACTGGAGTTTGCGGCCCTCTGGCTTTAATTCAAAAGCAGTGACTTTGGATGACGCAGGTCCTTTTAATGGCTCTGTTGTGTTTTTATCTGGACAAAACGAAACATCAATCAACATTACTGTCAAAGGCGATGACATACCGGAGTTGAATGAAACTGTAACCCTTTCTCTAGATAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGCGATGACATACCGGAGTT
59.9
GCTCACTAGGGCTGCTTTCA
60.04
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGGCGATGACATACCGGAG
59.61
GCTCACTAGGGCTGCTTTCA
60.04
146
PCR template sequence:
TTGTGTTTTTATCTGGACAAAACGAAACATCAATCAACATTACTGTCAAAGGCGATGACATACCGGAGTTGAATGAAACTGTAACCCTTTCTCTAGATAGCTTCTGTTCTACATTCAGGACAGCGATAATGTTTATGGAGAAATAGCCTTTTTTCCTGGGGAAAGCCAGAAGATTGAAAGCAGCCCTAGTGAGCGATCCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-217-5p(1), mmu-miR-214-3p(1), mmu-miR-136-5p(1), mmu-miR-690(1), mmu-miR-207(1), mmu-miR-300-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTCTCTAGATAGCTTCTGTTCTACA
siRNA sets
AACAGAAGCTATCTAGAGA, AGAACAGAAGCTATCTAGA, GAACAGAAGCTATCTAGAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADGRV1_731_ORF_1
0.8801
0.033257005
0.686080298
594
ORF sequence:
ATGGACCCCTTGCGAGCAAAAGATGGCATCTTAAATACATCTAGGAGAAGCAGCCTCCTTTTCCCAGAACAGAACCAACAAGTTTCTATAAAATTACCGATAAGGAATGATGCATTCCTCCAGAATGGGGCCCACTTCCTAGTGCAGTTGGAAGCTGTGGTGTTGGTGAACATATTCCCTCCGATTCCACCAGTAAGTCCCAGATTCGGAGAAATCAGAAATATTTCATTACTGGTTACCCCAGCCATTGCAAATGGAGAAATTGGCTTTCTTAGCAACCTTCCAATTATTTTGCATGAACCCAAAGATTCTTCTGCTGAGGTGGTATCTATCCCCTTGCATCGAGATGGAACTGATGGCCAGGCTACCGTGTACTGGAGTTTGCGGCCCTCTGGCTTTAATTCAAAAGCAGTGACTTTGGATGACGCAGGTCCTTTTAATGGCTCTGTTGTGTTTTTATCTGGACAAAACGAAACATCAATCAACATTACTGTCAAAGGCGATGACATACCGGAGTTGAATGAAACTGTAACCCTTTCTCTAGATAGCTTCTGTTCTACATTCAGGACAGCGATAATGTTTATGGAGAAATAG
Peptide sequence:
MDPLRAKDGILNTSRRSSLLFPEQNQQVSIKLPIRNDAFLQNGAHFLVQLEAVVLVNIFPPIPPVSPRFGEIRNISLLVTPAIANGEIGFLSNLPIILHEPKDSSAEVVSIPLHRDGTDGQATVYWSLRPSGFNSKAVTLDDAGPFNGSVVFLSGQNETSINITVKGDDIPELNETVTLSLDSFCSTFRTAIMFMEK
IRESfinder result
IRESfinder score
0.636185921
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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