top of page
mmu_circAdgrv1_566
Basic information of circular RNA
PanCircBase ID:
mmu_circAdgrv1_566
mm39_Chr. Position ID:
chr13|81727403|81727969|-
Gene name:
Adgrv1
Transcript:
ENSMUST00000095585.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
566
Exon/intron sizes in nt:
566
Flanking exon/introns:
chr13:81727115-81727403|chr13:81727969-81729810
Splice length:
566
Other database IDs:
circBase: hsa_circ_0129954, circAtlas: hsa-ADGRV1_0102, CIRCpedia: HSA_CIRCpedia_123549
Human Ortholog IDs:
Mature spliced Sequence:
GTACCAGAAAATGATGAACTATTTTTGATTCAACTGAGAAGTGTAGAAGGAGGAGCAGAGATTAATGCTTCTAGGAGCTCGGTTGAAATCATTGTGAAGAAAAATGATAGTCCTGTGAACTTCATGCAGAGTGTTTACGTGGTTCCCGAGGACGACCACGTACTCACTATTCCCGTGCTTCGTGGGAAGGATAGTGATGGAAATCTCATTGGATCTGATGAAACCCAAGTGTCAATCAGATACAAAGTAATGACTTGGGATTCAACAGCACATGCCCAGCAAAACGTTGACTTTATTGATCTTCAGCCGGATACTACTCTTGTCTTTCCCCCTTTTGTTCATGAATCACACCTGAAATTTCAGATAATCGATGACCTTATACCCGAGATAGCTGAGTCATTTCACATCATGTTACTAAAGAACACCTTACAGGGAGATGCTGTGCTAATGGGCCCTTCTACAGTACAGGTCACCATTAAGCCAAATGACAAGCCCTATGGAGTTCTTTCATTCAATAGTATTTTGTTTGAAAGACCAGTTATAATTGATGAAGATACAGCATCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCAAATGACAAGCCCTATGG
59.59
CAACCGAGCTCCTAGAAGCA
59.47
172
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCAAATGACAAGCCCTATGG
59.59
TCAACCGAGCTCCTAGAAGC
59.18
173
PCR template sequence:
AGGTCACCATTAAGCCAAATGACAAGCCCTATGGAGTTCTTTCATTCAATAGTATTTTGTTTGAAAGACCAGTTATAATTGATGAAGATACAGCATCCAGGTACCAGAAAATGATGAACTATTTTTGATTCAACTGAGAAGTGTAGAAGGAGGAGCAGAGATTAATGCTTCTAGGAGCTCGGTTGAAATCATTGTGAAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-30e-5p(1), mmu-miR-30a-5p(1), mmu-miR-30c-5p(1), mmu-miR-30d-5p(1), mmu-miR-30b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATACAGCATCCAGGTACCAGAAAATG
siRNA sets
TTTTCTGGTACCTGGATGC, TTTCTGGTACCTGGATGCT, ATTTTCTGGTACCTGGATG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADGRV1_566_ORF_1
0.975
0.085005205
0.572001232
471
ORF sequence:
ATGCAGAGTGTTTACGTGGTTCCCGAGGACGACCACGTACTCACTATTCCCGTGCTTCGTGGGAAGGATAGTGATGGAAATCTCATTGGATCTGATGAAACCCAAGTGTCAATCAGATACAAAGTAATGACTTGGGATTCAACAGCACATGCCCAGCAAAACGTTGACTTTATTGATCTTCAGCCGGATACTACTCTTGTCTTTCCCCCTTTTGTTCATGAATCACACCTGAAATTTCAGATAATCGATGACCTTATACCCGAGATAGCTGAGTCATTTCACATCATGTTACTAAAGAACACCTTACAGGGAGATGCTGTGCTAATGGGCCCTTCTACAGTACAGGTCACCATTAAGCCAAATGACAAGCCCTATGGAGTTCTTTCATTCAATAGTATTTTGTTTGAAAGACCAGTTATAATTGATGAAGATACAGCATCCAGGTACCAGAAAATGATGAACTATTTTTGA
Peptide sequence:
MQSVYVVPEDDHVLTIPVLRGKDSDGNLIGSDETQVSIRYKVMTWDSTAHAQQNVDFIDLQPDTTLVFPPFVHESHLKFQIIDDLIPEIAESFHIMLLKNTLQGDAVLMGPSTVQVTIKPNDKPYGVLSFNSILFERPVIIDEDTASRYQKMMNYF
IRESfinder result
IRESfinder score
0.747480272
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page