top of page
mmu_circAdgrv1_1164
Basic information of circular RNA
PanCircBase ID:
mmu_circAdgrv1_1164
mm39_Chr. Position ID:
chr13|81676567|81688280|-
Gene name:
Adgrv1
Transcript:
ENSMUST00000095585.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
28,27,26,25,24
Exon/intron offsets:
0,3118,4562,7861,11510
Genomic length:
11713
Exon/intron sizes in nt:
6,10,14,08,11,30,203
Flanking exon/introns:
chr13:81673648-81676567|chr13:81688280-81691487
Splice length:
1164
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GCTTGATGCAGTTCTCCACAGGGTTGCCTCCTCAGCCTGAAGATTCAATGAGTCTGCCTGCTAGCAGTGTGCCACATATCACAGTGCAGGAAGAGGATGGCGAAATCCGTTTACTGGTCATTCGTGCACAAGGGCTCCTTGGTCGGGTGACTGTAGGATTTAGAACAGTATCCCTGACAGCATTTAGTCCAGAGGACTACCAGAGCACTGCTGGCACATTAGAATTTCAATCAGGAGAAAGATATAAATATATATTTGTCAACATCACTGATAATTCCATCCCTGAACTGGAAAAATCTTTTAAAGTTGAGTTGTTAAACTTGGATGGAGGAGTGTCTGACCTCTTTAGGGTTGATGGCAGTGGGAGTGGAGAAGCGGACACGGATTTCTTCCTTCCACCTGTCCTCCCGCATGCCAGTCTAGGAGTGGCTTCCCAGATTCTGGTGACCATTGCTGCCTCTGACCATGCTCATGGGGTGTTTGAATTCAGCCCTGAATCACTCTTCGTCAGTGGAACTGAACCAGAGGATGGATACAGTACTGTCGTGTTAAATGTTACACGGACTCGGGGAGCCCTGTCTGCAGTGACTTTGCAATGGAAGGTAGACTCGGACCTGGATGGGGATCTCGCCATTACATCTGGCAACATCACATTTGAGACTGGGCAGAGGATTGCTTCCATCACTGTGGAGATACTGTCAGATGAAGAGCCAGAGCTAGACAAGGCACTCACCGTGTCGATCCTCAACGTGTCCAGTGGCTCCTTGGGAGTTCTTACAAATGCCACATTGACAATTTTGGCTAGTGATGATCCTTATGGGGTCTTTATTTTTCCTAACAAAACTAGACCTTTGAGTGTTGAAGAAGCAACCCAGAATGTCACATTATCGATAATAAGGTTGAAAGGCCTCATGGGAGAAGTTGCAGTCTCATATGCAACCATAGATGATATGGAAAAGCCACCGTATTTCCCACCTAATTTAGCTAGAGCAACTCAAGGAGGAGATTACATATCAGCATCTGGATTGGCTCTTTTCAGAGCTAATCAGACTGAGGCAACAATCACTATTTCAATCCTAGATGATGCTGAACCAGAACGCTCAGAATCTGTGTTCATTGAACTTTTCAATTCCTCTTTAGTAGACAAAGTACAGAATCGCCCAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGAACCAGAACGCTCAGA
60.32
CCATCCTCTTCCTGCACTGT
59.38
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATGCTGAACCAGAACGCTCA
59.96
TGCTAGCAGGCAGACTCATT
59.09
147
PCR template sequence:
ACTATTTCAATCCTAGATGATGCTGAACCAGAACGCTCAGAATCTGTGTTCATTGAACTTTTCAATTCCTCTTTAGTAGACAAAGTACAGAATCGCCCAAGCTTGATGCAGTTCTCCACAGGGTTGCCTCCTCAGCCTGAAGATTCAATGAGTCTGCCTGCTAGCAGTGTGCCACATATCACAGTGCAGGAAGAGGATGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
15
Interacting miRNAs (#binding sites)
mmu-miR-705(2), mmu-miR-101a-3p(1), mmu-miR-146a-5p(1), mmu-miR-217-5p(1), mmu-miR-10b-5p(1), mmu-miR-139-5p(1), mmu-miR-10a-5p(1), mmu-miR-149-5p(1), mmu-miR-433-5p(1), mmu-miR-125a-5p(1), mmu-miR-190b-5p(1), mmu-miR-207(1), mmu-miR-452-3p(1), mmu-miR-540-3p(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CAGAATCGCCCAAGCTTGATGCAGTT
siRNA sets
AACTGCATCAAGCTTGGGC,TCAAGCTTGGGCGATTCTG,ATCAAGCTTGGGCGATTCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADGRV1_1164_ORF_1
0.957
0.129609985
0.999998952
2322
ORF sequence:
ATGCAGTTCTCCACAGGGTTGCCTCCTCAGCCTGAAGATTCAATGAGTCTGCCTGCTAGCAGTGTGCCACATATCACAGTGCAGGAAGAGGATGGCGAAATCCGTTTACTGGTCATTCGTGCACAAGGGCTCCTTGGTCGGGTGACTGTAGGATTTAGAACAGTATCCCTGACAGCATTTAGTCCAGAGGACTACCAGAGCACTGCTGGCACATTAGAATTTCAATCAGGAGAAAGATATAAATATATATTTGTCAACATCACTGATAATTCCATCCCTGAACTGGAAAAATCTTTTAAAGTTGAGTTGTTAAACTTGGATGGAGGAGTGTCTGACCTCTTTAGGGTTGATGGCAGTGGGAGTGGAGAAGCGGACACGGATTTCTTCCTTCCACCTGTCCTCCCGCATGCCAGTCTAGGAGTGGCTTCCCAGATTCTGGTGACCATTGCTGCCTCTGACCATGCTCATGGGGTGTTTGAATTCAGCCCTGAATCACTCTTCGTCAGTGGAACTGAACCAGAGGATGGATACAGTACTGTCGTGTTAAATGTTACACGGACTCGGGGAGCCCTGTCTGCAGTGACTTTGCAATGGAAGGTAGACTCGGACCTGGATGGGGATCTCGCCATTACATCTGGCAACATCACATTTGAGACTGGGCAGAGGATTGCTTCCATCACTGTGGAGATACTGTCAGATGAAGAGCCAGAGCTAGACAAGGCACTCACCGTGTCGATCCTCAACGTGTCCAGTGGCTCCTTGGGAGTTCTTACAAATGCCACATTGACAATTTTGGCTAGTGATGATCCTTATGGGGTCTTTATTTTTCCTAACAAAACTAGACCTTTGAGTGTTGAAGAAGCAACCCAGAATGTCACATTATCGATAATAAGGTTGAAAGGCCTCATGGGAGAAGTTGCAGTCTCATATGCAACCATAGATGATATGGAAAAGCCACCGTATTTCCCACCTAATTTAGCTAGAGCAACTCAAGGAGGAGATTACATATCAGCATCTGGATTGGCTCTTTTCAGAGCTAATCAGACTGAGGCAACAATCACTATTTCAATCCTAGATGATGCTGAACCAGAACGCTCAGAATCTGTGTTCATTGAACTTTTCAATTCCTCTTTAGTAGACAAAGTACAGAATCGCCCAAGCTTGATGCAGTTCTCCACAGGGTTGCCTCCTCAGCCTGAAGATTCAATGAGTCTGCCTGCTAGCAGTGTGCCACATATCACAGTGCAGGAAGAGGATGGCGAAATCCGTTTACTGGTCATTCGTGCACAAGGGCTCCTTGGTCGGGTGACTGTAGGATTTAGAACAGTATCCCTGACAGCATTTAGTCCAGAGGACTACCAGAGCACTGCTGGCACATTAGAATTTCAATCAGGAGAAAGATATAAATATATATTTGTCAACATCACTGATAATTCCATCCCTGAACTGGAAAAATCTTTTAAAGTTGAGTTGTTAAACTTGGATGGAGGAGTGTCTGACCTCTTTAGGGTTGATGGCAGTGGGAGTGGAGAAGCGGACACGGATTTCTTCCTTCCACCTGTCCTCCCGCATGCCAGTCTAGGAGTGGCTTCCCAGATTCTGGTGACCATTGCTGCCTCTGACCATGCTCATGGGGTGTTTGAATTCAGCCCTGAATCACTCTTCGTCAGTGGAACTGAACCAGAGGATGGATACAGTACTGTCGTGTTAAATGTTACACGGACTCGGGGAGCCCTGTCTGCAGTGACTTTGCAATGGAAGGTAGACTCGGACCTGGATGGGGATCTCGCCATTACATCTGGCAACATCACATTTGAGACTGGGCAGAGGATTGCTTCCATCACTGTGGAGATACTGTCAGATGAAGAGCCAGAGCTAGACAAGGCACTCACCGTGTCGATCCTCAACGTGTCCAGTGGCTCCTTGGGAGTTCTTACAAATGCCACATTGACAATTTTGGCTAGTGATGATCCTTATGGGGTCTTTATTTTTCCTAACAAAACTAGACCTTTGAGTGTTGAAGAAGCAACCCAGAATGTCACATTATCGATAATAAGGTTGAAAGGCCTCATGGGAGAAGTTGCAGTCTCATATGCAACCATAGATGATATGGAAAAGCCACCGTATTTCCCACCTAATTTAGCTAGAGCAACTCAAGGAGGAGATTACATATCAGCATCTGGATTGGCTCTTTTCAGAGCTAATCAGACTGAGGCAACAATCACTATTTCAATCCTAGATGATGCTGAACCAGAACGCTCAGAATCTGTGTTCATTGAACTTTTCAATTCCTCTTTAGTAGACAAAGTACAGAATCGCCCA
Peptide sequence:
MQFSTGLPPQPEDSMSLPASSVPHITVQEEDGEIRLLVIRAQGLLGRVTVGFRTVSLTAFSPEDYQSTAGTLEFQSGERYKYIFVNITDNSIPELEKSFKVELLNLDGGVSDLFRVDGSGSGEADTDFFLPPVLPHASLGVASQILVTIAASDHAHGVFEFSPESLFVSGTEPEDGYSTVVLNVTRTRGALSAVTLQWKVDSDLDGDLAITSGNITFETGQRIASITVEILSDEEPELDKALTVSILNVSSGSLGVLTNATLTILASDDPYGVFIFPNKTRPLSVEEATQNVTLSIIRLKGLMGEVAVSYATIDDMEKPPYFPPNLARATQGGDYISASGLALFRANQTEATITISILDDAEPERSESVFIELFNSSLVDKVQNRPSLMQFSTGLPPQPEDSMSLPASSVPHITVQEEDGEIRLLVIRAQGLLGRVTVGFRTVSLTAFSPEDYQSTAGTLEFQSGERYKYIFVNITDNSIPELEKSFKVELLNLDGGVSDLFRVDGSGSGEADTDFFLPPVLPHASLGVASQILVTIAASDHAHGVFEFSPESLFVSGTEPEDGYSTVVLNVTRTRGALSAVTLQWKVDSDLDGDLAITSGNITFETGQRIASITVEILSDEEPELDKALTVSILNVSSGSLGVLTNATLTILASDDPYGVFIFPNKTRPLSVEEATQNVTLSIIRLKGLMGEVAVSYATIDDMEKPPYFPPNLARATQGGDYISASGLALFRANQTEATITISILDDAEPERSESVFIELFNSSLVDKVQNRP
IRESfinder result
IRESfinder score
0.718159713
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page