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mmu_circAdgrb1_1011
Basic information of circular RNA
PanCircBase ID:
mmu_circAdgrb1_1011
mm39_Chr. Position ID:
chr15|74400778|74401789|+
Gene name:
Adgrb1
Transcript:
ENSMUST00000042035.16
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
1011
Exon/intron sizes in nt:
1011
Flanking exon/introns:
chr15:74388715-74400778|chr15:74401789-74410146
Splice length:
1011
Other database IDs:
circBase: mmu_circ_0005788, CIRCpedia: MMU_CIRCpedia_28745, circAtlas: mmu-Bai1_0006
Human Ortholog IDs:
Mature spliced Sequence:
CTACCATTGGAAGCCACAGGCAAACACCAGGAGCCTGGACTTTAGGAGTTATCGCTGCTTCCACTGTCTCCTGAAACCCTGCCCTGCCCCCACCTTGCCTTCACCCAGCCCCTGCCACTGGCTCACTGCCCTGGACGGCCCTGCCTGCTGCCGGACCCTGGCATGTCAAGGCCTGGCCTGCACTTGCCTGCCCAGCCCGCGGAACCCCAGCGGCCCCGCGAGCTAGGATGAGGGGCCAGGCTGCTGCCCCGGGCCCCATCTGGATCCTTGCTCCACTCCTGCTGTTACTATTGCTATTGGGGCGCTGGGCGCGCGCTGCCTCTGGGGCAGACATAGGGCCTGGGACAGAGCAGTGCACCACGTTGGTGCAGGGAAAGTTCTTCGGCTACTTCTCGGCGGCTGCTGTATTTCCGGCCAACGCCTCACGCTGCTCTTGGACCCTTCGCAACCCGGACCCTCGTCGTTACACGCTCTACATGAAGGTGGCCAAGGCACCTGCACCCTGCAGCGGCCCCGGCCGAGTTCGTACCTACCAGTTCGACTCTTTCTTGGAGTCTACACGCACCTACCTGGGTGTGGAGAGCTTTGACGAAGTTCTGCGGCTCTGCGATTCCTCTGCACCCCTCGCCTTTCTACAGGCCAGCAAACAGTTTCTACAGATGCAACGCCAACAGCCACCCCAAGACGGTGACCTCGGACCCCAGGGCGAGTTCCCCAGCTCTAGTGACGACTTCTCCGTGGAGTACCTGGTGGTGGGCAATCGCAACCCCAGCCATGCTGCCTGTCAGATGCTGTGTCGCTGGCTGGATGCCTGTCTAGCCGGCAGCCGCAGCTCACACCCCTGTGGCATCATGCAGACTCCCTGCGCCTGCCTGGGTGGAGATGTTGGAGACCCTGCTTCCAGCCCCTTGGTCCCCCGTGGGGACGTCTGCTTGAGGGACGGCGTAGCTGGTGGCCCTGAGAACTGCCTCACCAGCCTGACCCAGGACCGGGGTGGGCACGGCTCAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGAGAACTGCCTCACCAG
60.04
CAGGGCAGGGTTTCAGGAG
60
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGACGTCTGCTTGAGGGAC
60.08
GAGACAGTGGAAGCAGCGAT
60.11
159
PCR template sequence:
GTCCCCCGTGGGGACGTCTGCTTGAGGGACGGCGTAGCTGGTGGCCCTGAGAACTGCCTCACCAGCCTGACCCAGGACCGGGGTGGGCACGGCTCAGCAGCTACCATTGGAAGCCACAGGCAAACACCAGGAGCCTGGACTTTAGGAGTTATCGCTGCTTCCACTGTCTCCTGAAACCCTGCCCTGCCCCCACCTTGCCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-214-3p(1), mmu-miR-503-5p(1), mmu-miR-149-5p(1), mmu-miR-194-5p(1), mmu-miR-34b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CACGGCTCAGCAGCTACCATTGGAAG
siRNA sets
TTCCAATGGTAGCTGCTGA, CTTCCAATGGTAGCTGCTG, CCAATGGTAGCTGCTGAGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADGRB1_1011_ORF_1
0.7385
0.283796123
0.968776953
858
ORF sequence:
ATGAGGGGCCAGGCTGCTGCCCCGGGCCCCATCTGGATCCTTGCTCCACTCCTGCTGTTACTATTGCTATTGGGGCGCTGGGCGCGCGCTGCCTCTGGGGCAGACATAGGGCCTGGGACAGAGCAGTGCACCACGTTGGTGCAGGGAAAGTTCTTCGGCTACTTCTCGGCGGCTGCTGTATTTCCGGCCAACGCCTCACGCTGCTCTTGGACCCTTCGCAACCCGGACCCTCGTCGTTACACGCTCTACATGAAGGTGGCCAAGGCACCTGCACCCTGCAGCGGCCCCGGCCGAGTTCGTACCTACCAGTTCGACTCTTTCTTGGAGTCTACACGCACCTACCTGGGTGTGGAGAGCTTTGACGAAGTTCTGCGGCTCTGCGATTCCTCTGCACCCCTCGCCTTTCTACAGGCCAGCAAACAGTTTCTACAGATGCAACGCCAACAGCCACCCCAAGACGGTGACCTCGGACCCCAGGGCGAGTTCCCCAGCTCTAGTGACGACTTCTCCGTGGAGTACCTGGTGGTGGGCAATCGCAACCCCAGCCATGCTGCCTGTCAGATGCTGTGTCGCTGGCTGGATGCCTGTCTAGCCGGCAGCCGCAGCTCACACCCCTGTGGCATCATGCAGACTCCCTGCGCCTGCCTGGGTGGAGATGTTGGAGACCCTGCTTCCAGCCCCTTGGTCCCCCGTGGGGACGTCTGCTTGAGGGACGGCGTAGCTGGTGGCCCTGAGAACTGCCTCACCAGCCTGACCCAGGACCGGGGTGGGCACGGCTCAGCAGCTACCATTGGAAGCCACAGGCAAACACCAGGAGCCTGGACTTTAGGAGTTATCGCTGCTTCCACTGTCTCCTGA
Peptide sequence:
MRGQAAAPGPIWILAPLLLLLLLLGRWARAASGADIGPGTEQCTTLVQGKFFGYFSAAAVFPANASRCSWTLRNPDPRRYTLYMKVAKAPAPCSGPGRVRTYQFDSFLESTRTYLGVESFDEVLRLCDSSAPLAFLQASKQFLQMQRQQPPQDGDLGPQGEFPSSSDDFSVEYLVVGNRNPSHAACQMLCRWLDACLAGSRSSHPCGIMQTPCACLGGDVGDPASSPLVPRGDVCLRDGVAGGPENCLTSLTQDRGGHGSAATIGSHRQTPGAWTLGVIAASTVS
IRESfinder result
IRESfinder score
0.317145255
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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