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mmu_circAdgb_475
Basic information of circular RNA
PanCircBase ID:
mmu_circAdgb_475
mm39_Chr. Position ID:
chr10|10306814|10311817|-
Gene name:
Adgb
Transcript:
ENSMUST00000179956.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
9,8,7,6
Exon/intron offsets:
0,211,2342,4863
Genomic length:
5003
Exon/intron sizes in nt:
13,01,18,87,140
Flanking exon/introns:
chr10:10302477-10306814|chr10:10311817-10318228
Splice length:
475
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GGTTGTTGGAGAAAGATTACTGTGGATGACTTCCTGCCATTTGATGAGGAGAACAATCTCTTGCTTCCAGCTACATCCTATGAATTTGAACTCTGGCCAATGCTACTGTCGAAAGCTATCATTAAGCTGGCAAATGTTGACGTCCATGTAGCACACAGGAGAGAGCTAGGAGAACTCACAGTAATCCACGCTCTGACTGGGTGGTTGCCTGAAGTCATCCCTCTTCACCCAGCATATGTGGACAGAGTTTGGGAGCTCTTGAAGGAAATACTGCCTGAGTTTAAGCTCACAGAAGAGCCCAGTTCTGAAAGCAAAATCACAACGATAGACAACAAACTGAAGGAAGATGGCAAGGACGGGAAGGATGGGAAGGATGGCAAGGATGGGAAGGATGGCAAGGACAGCAAGGACTTCAAGTTGGAAGTCTCCCTTACAAACCTGAAGATTCCCGAGAAGGTCGACAGAGCTGCAAAGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAGGATGGCAAGGACAGCAA
59.89
TCTCCTCATCAAATGGCAGGA
58.8
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAAGGATGGGAAGGATGGCA
59.74
TCTCCTCATCAAATGGCAGGA
58.8
150
PCR template sequence:
GGCAAGGATGGGAAGGATGGCAAGGACAGCAAGGACTTCAAGTTGGAAGTCTCCCTTACAAACCTGAAGATTCCCGAGAAGGTCGACAGAGCTGCAAAGGGGTTGTTGGAGAAAGATTACTGTGGATGACTTCCTGCCATTTGATGAGGAGAACAATCTCTTGCTTCCAGCTACATCCTATGAATTTGAACTCTGGCCAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-150-5p(1), mmu-miR-207(1), mmu-miR-669d-5p(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AGAGCTGCAAAGGGGTTGTTGGAGAA
siRNA sets
TCTCCAACAACCCCTTTGC,CTCCAACAACCCCTTTGCA,AACAACCCCTTTGCAGCTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADGB_475_ORF_1
1.2266
0.277411872
0.745083606
405
ORF sequence:
ATGCTACTGTCGAAAGCTATCATTAAGCTGGCAAATGTTGACGTCCATGTAGCACACAGGAGAGAGCTAGGAGAACTCACAGTAATCCACGCTCTGACTGGGTGGTTGCCTGAAGTCATCCCTCTTCACCCAGCATATGTGGACAGAGTTTGGGAGCTCTTGAAGGAAATACTGCCTGAGTTTAAGCTCACAGAAGAGCCCAGTTCTGAAAGCAAAATCACAACGATAGACAACAAACTGAAGGAAGATGGCAAGGACGGGAAGGATGGGAAGGATGGCAAGGATGGGAAGGATGGCAAGGACAGCAAGGACTTCAAGTTGGAAGTCTCCCTTACAAACCTGAAGATTCCCGAGAAGGTCGACAGAGCTGCAAAGGGGTTGTTGGAGAAAGATTACTGTGGATGA
Peptide sequence:
MLLSKAIIKLANVDVHVAHRRELGELTVIHALTGWLPEVIPLHPAYVDRVWELLKEILPEFKLTEEPSSESKITTIDNKLKEDGKDGKDGKDGKDGKDGKDSKDFKLEVSLTNLKIPEKVDRAAKGLLEKDYCG
IRESfinder result
IRESfinder score
0.349615568
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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