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mmu_circAdck5_171
Basic information of circular RNA
PanCircBase ID:
mmu_circAdck5_171
mm39_Chr. Position ID:
chr15|76478873|76479138|+
Gene name:
Adck5
Transcript:
ENSMUST00000162503.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
11,12
Exon/intron offsets:
0,173
Genomic length:
265
Exon/intron sizes in nt:
79,92
Flanking exon/introns:
chr15:76478810-76478873|chr15:76479138-76479213
Splice length:
171
Other database IDs:
CIRCpedia: MMU_CIRCpedia_29378, circAtlas: mmu-Adck5_0004
Human Ortholog IDs:
Mature spliced Sequence:
TTCTGGTGCGGAAAGGTCCAGATGGAAAGGCAGAGCTGGTGCTCCTGGACCACGGGCTCTACCAGTTCCTGGACGAGAAGGACCGATCCTCCCTCTGCCAGCTGTGGCGGGCCATCATCCTGAGGGACAATGCTGCAATGAAGAAACATGCAGCTGCACTTGGGGTCCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATCCTGAGGGACAATGCTGC
60.11
GGTCCTTCTCGTCCAGGAAC
59.75
139
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGAGGGACAATGCTGCAA
60.61
GGTCCTTCTCGTCCAGGAAC
59.75
137
PCR template sequence:
TCCTCCCTCTGCCAGCTGTGGCGGGCCATCATCCTGAGGGACAATGCTGCAATGAAGAAACATGCAGCTGCACTTGGGGTCCAAGTTCTGGTGCGGAAAGGTCCAGATGGAAAGGCAGAGCTGGTGCTCCTGGACCACGGGCTCTACCAGTTCCTGGACGAGAAGGACCG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(1), mmu-miR-298-5p(1), mmu-miR-467b-5p(1), mmu-miR-107-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTGGGGTCCAAGTTCTGGTGCGGAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADCK5_171_ORF_1
1.2515
0.453043698
0.598847148
204
ORF sequence:
ATGAAGAAACATGCAGCTGCACTTGGGGTCCAAGTTCTGGTGCGGAAAGGTCCAGATGGAAAGGCAGAGCTGGTGCTCCTGGACCACGGGCTCTACCAGTTCCTGGACGAGAAGGACCGATCCTCCCTCTGCCAGCTGTGGCGGGCCATCATCCTGAGGGACAATGCTGCAATGAAGAAACATGCAGCTGCACTTGGGGTCCAA
Peptide sequence:
MKKHAAALGVQVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRDNAAMKKHAAALGVQ
IRESfinder result
IRESfinder score
0.238959472
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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