top of page

mmu_circAdat1_850

Basic information of circular RNA
PanCircBase ID:

mmu_circAdat1_850

mm39_Chr. Position ID:

chr8|112704670|112709397|-

Gene name:

Adat1

Transcript:

ENSMUST00000034427.12

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

3

Exon/intron indexes:

8,7,6

Exon/intron offsets:

0,1260,4123

Genomic length:

4727

Exon/intron sizes in nt:

10,01,46,604

Flanking exon/introns:

chr8:112698823-112704670|chr8:112709397-112713753

Splice length:

850

Other database IDs:

circAtlas: mmu-Adat1_0009

Human Ortholog IDs:
Mature spliced Sequence:

GTGGGGATGCCTCCATCATCCCGATGCTCGAGTTTGAAGAACAGCCTTGCTGTCCTGTCATCAGAAGTTGGGCCAACAACTCACCTGTACAAGAGACTGAGAATCTAGAGGATTCTAAAGATAAAAGGAACTGTGAAGATCCCGCCAGTCCTGTAGCCAAGAAGATGAGGCTGGGAACACCTGCCAGGTCACTCTCCAATTGTGTAGCTCACCATGGGACCCAGGAAAGTGGTCCAGTCAAACCAGATGTCAGCAGCTCTGATCTCACCAAGGAGGAACCAGATGCTGCCAATGGAATAGCTTCAGGTAGCTTCAGAGTGGTGGATGTGTACAGGACGGGAGCCAAGTGTGTTCCTGGAGAAACTGGAGACTTGAGAGAGCCAGGTGCTGCCTACCACCAGGTGGGGCTACTTCGTGTAAAACCTGGCAGGGGAGACAGGACATGCTCCATGTCCTGCAGTGACAAGATGGCAAGGTGGAATGTCCTCGGATGCCAGGGCGCACTGCTGATGCACTTCCTGGAGAAGCCTATCTACCTGTCAGCTGTGGTCATCGGGAAGTGCCCGTACAGCCAGGAAGCCATGAGGAGAGCATTGACTGGCAGGTGTGAGGAAACCTTGGTTTTACCCAGAGGCTTTGGAGTTCAAGAACTGGAAATACAGCAGTCGGGTTTACTGTTTGAACAGAGCCGCTGTGCGGTGCACAGGAAAAGAGGTGACAGTCCAGGCCGACTCGTCCCCTGTGGGGCAGCTATCAGCTGGAGCGCTGTCCCTCAGCAGCCCTTGGATGTTACAGCCAATGGTTTTCCACAGGGAACAACAAAGAAAGAGATTGGAAGCCCTAGGGCCAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

AGCCCTTGGATGTTACAGCC

60.03

TACAGGTGAGTTGTTGGCCC

59.89

162

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

CTCAGCAGCCCTTGGATGTT

60.32

GATGACAGGACAGCAAGGCT

60.04

141

PCR template sequence:

CTATCAGCTGGAGCGCTGTCCCTCAGCAGCCCTTGGATGTTACAGCCAATGGTTTTCCACAGGGAACAACAAAGAAAGAGATTGGAAGCCCTAGGGCCAGGTGGGGATGCCTCCATCATCCCGATGCTCGAGTTTGAAGAACAGCCTTGCTGTCCTGTCATCAGAAGTTGGGCCAACAACTCACCTGTACAAGAGACTGA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

6

Interacting miRNAs (#binding sites)

mmu-miR-135a-5p(1), mmu-miR-149-5p(1), mmu-miR-383-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-452-3p(1), mmu-miR-3470b(1)

siRNAs for circular RNA silencing
Junction sequence

GCCCTAGGGCCAGGTGGGGATGCCTC

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCADAT1_850_ORF_1

0.7235

0.167672169

0.96542419

912

ORF sequence:

ATGTTACAGCCAATGGTTTTCCACAGGGAACAACAAAGAAAGAGATTGGAAGCCCTAGGGCCAGGTGGGGATGCCTCCATCATCCCGATGCTCGAGTTTGAAGAACAGCCTTGCTGTCCTGTCATCAGAAGTTGGGCCAACAACTCACCTGTACAAGAGACTGAGAATCTAGAGGATTCTAAAGATAAAAGGAACTGTGAAGATCCCGCCAGTCCTGTAGCCAAGAAGATGAGGCTGGGAACACCTGCCAGGTCACTCTCCAATTGTGTAGCTCACCATGGGACCCAGGAAAGTGGTCCAGTCAAACCAGATGTCAGCAGCTCTGATCTCACCAAGGAGGAACCAGATGCTGCCAATGGAATAGCTTCAGGTAGCTTCAGAGTGGTGGATGTGTACAGGACGGGAGCCAAGTGTGTTCCTGGAGAAACTGGAGACTTGAGAGAGCCAGGTGCTGCCTACCACCAGGTGGGGCTACTTCGTGTAAAACCTGGCAGGGGAGACAGGACATGCTCCATGTCCTGCAGTGACAAGATGGCAAGGTGGAATGTCCTCGGATGCCAGGGCGCACTGCTGATGCACTTCCTGGAGAAGCCTATCTACCTGTCAGCTGTGGTCATCGGGAAGTGCCCGTACAGCCAGGAAGCCATGAGGAGAGCATTGACTGGCAGGTGTGAGGAAACCTTGGTTTTACCCAGAGGCTTTGGAGTTCAAGAACTGGAAATACAGCAGTCGGGTTTACTGTTTGAACAGAGCCGCTGTGCGGTGCACAGGAAAAGAGGTGACAGTCCAGGCCGACTCGTCCCCTGTGGGGCAGCTATCAGCTGGAGCGCTGTCCCTCAGCAGCCCTTGGATGTTACAGCCAATGGTTTTCCACAGGGAACAACAAAGAAAGAGATTGGAAGCCCTAGGGCC

Peptide sequence:

MLQPMVFHREQQRKRLEALGPGGDASIIPMLEFEEQPCCPVIRSWANNSPVQETENLEDSKDKRNCEDPASPVAKKMRLGTPARSLSNCVAHHGTQESGPVKPDVSSSDLTKEEPDAANGIASGSFRVVDVYRTGAKCVPGETGDLREPGAAYHQVGLLRVKPGRGDRTCSMSCSDKMARWNVLGCQGALLMHFLEKPIYLSAVVIGKCPYSQEAMRRALTGRCEETLVLPRGFGVQELEIQQSGLLFEQSRCAVHRKRGDSPGRLVPCGAAISWSAVPQQPLDVTANGFPQGTTKKEIGSPRA

IRESfinder result

IRESfinder score

0.370188329

IRES/non IRES

non-IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

logo.png

Institute of Life sciences, Bhubaneswar, India

bottom of page