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mmu_circAdarb1_169
Basic information of circular RNA
PanCircBase ID:
mmu_circAdarb1_169
mm39_Chr. Position ID:
chr10|77195400|77195569|-
Gene name:
Adarb1
Transcript:
ENSMUST00000020496.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
169
Exon/intron sizes in nt:
169
Flanking exon/introns:
chr10:77161774-77195400|chr10:77195569-77253928
Splice length:
169
Other database IDs:
CIRCpedia: MMU_CIRCpedia_29644, circAtlas: mmu-Adarb1_0008
circAtlas: hsa-ADARB1_0029, CIRCpedia: HSA_CIRCpedia_112907
Human Ortholog IDs:
Mature spliced Sequence:
AGTGAAGTGTGTCAGGCTGGACATGGAGAGCCCAAGGTGTGGCTAAAGGAAGCTCGTCAGCCCAGTGCATCACGCTTGCTATTTTAGTGCTGCGGAGCAATGAGCTCACTTTGCTTGCCCTGAAGGAGTTTTGCCTCAGGATTTGAGACAAAAACTAAACAAATTCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTTGCCCTGAAGGAGTTT
59.81
GGGCTGACGAGCTTCCTTTA
59.75
121
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTGCTTGCCCTGAAGGAGTT
59.81
GGGCTGACGAGCTTCCTTTA
59.75
122
PCR template sequence:
AGTGCTGCGGAGCAATGAGCTCACTTTGCTTGCCCTGAAGGAGTTTTGCCTCAGGATTTGAGACAAAAACTAAACAAATTCAAGAGTGAAGTGTGTCAGGCTGGACATGGAGAGCCCAAGGTGTGGCTAAAGGAAGCTCGTCAGCCCAGTGCATCACGCTTGCTATTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
AAACAAATTCAAGAGTGAAGTGTGTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.54289052
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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