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mmu_circAdam5_1769
Basic information of circular RNA
PanCircBase ID:
mmu_circAdam5_1769
mm39_Chr. Position ID:
chr8|25271581|25308818|-
Gene name:
Adam5
Transcript:
ENSMUST00000050300.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
15
Exon/intron indexes:
16,15,14,13,12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,965,4568,10369,22792,24827,28435,29125,29484,30819,31819,33524,33885,36530,37157
Genomic length:
37237
Exon/intron sizes in nt:
217,91,196,96,187,134,82,158,72,66,178,77,79,56,80
Flanking exon/introns:
chr8:25237584-25271581|chr8:25308818-25313955
Splice length:
1769
Other database IDs:
CIRCpedia: MMU_CIRCpedia_214487, circAtlas: mmu-Adam5_0003
Human Ortholog IDs:
Mature spliced Sequence:
ATCCTCAGAAAACCACCCTGCAGACAACTGTTCCTGAAAAGATCTCATCACCGGATGTGGAAACAGATGCAGAAGACCATATGGCTTATCTTATTACAATAAATGAAACCCCCCATTTCATCCATCTTAAAAAACAATCATTTATAACTCCAACTGCAGTTGTTTATACTTACGACAGAAATGATGTTCAACATTCTCAACCTTTGTCAGCTCTGGAAAATTGCAATTACAATGGATATGTTGCAGGTTTCCCAAACTCTATCGTGACCCTCACCGTTTGCACAGGACTCAGGGGAATCATACAGTTTGAAAATGTCTCCTATGCAATCGAGCCCGTGGAAACCCTGTCAGGATTTGTGCACGTGATCTATGAGAACACAAACAAACATGCTGTGATTCCTGACCTGGGAAAGAATCAGTCATACAGTTGGTTTGACGAATCAGATTATCAATTCCGGAGTAACATGAAGAAATCTGGATTTACCGTGTTACGCCAACGATTCATTATGATGGATATCATCGTGGATAAAAAGCTGTTTGATTACATGGGTTCTGACACTGAAGTTGTGCTACAGAAAGTCATTCAGATCATCGGTTTCGTTAACACTATGCTCTCCAAGTTAAAACTGACTGTCTTAATAAATTCCATTGAAATCTGGTCGAAGGAAAACAGAATTCGTTTATCAAAGGCAGTTGATGACTTATTGGTTCAGTTCTCAATTTGGAAACATGAGTATAGATCACAACATGTTGCATACTTACTGGCATTTGAGGAGCACCCTGCTTCCACGGGGGCTCTATATCCAGGGAATCTGTGCAAACTGGAGTACAATGCTGCTGTTGCCCTGTATCCAAAAGGTTTATCGTTAGAATCGTTTAGTGTCATTGTCCTGCAGCTGCTGAGCATTGGTATGGGCTTAACTTACGACACTGAGAACTGCCACTGTACAGGAGAAGTTTGCCTAATGACGCCCAAAGCAATATATTCTGGGGGTGTGAAGGACTTCAGTACTTGTACCCTGGATGACTTTAAATACCTGTCAACAAGACAAGACCTTAGATGTCTCCAGGACTTGCCTTTGGAAAGAAAGCCAGCTCGCAGGCCAAGGAGAATCTGTGGCAATGGGATACTGGAGATGAACGAGCAATGTGACTGTGGCACTTTGAAGAACTGTACACATAGAAAATGCTGTGACCCTATGTCATGTCGATTGAAAAACAAGGCCACGTGTGGTTCTGGGGAGTGCTGTAGTCAAGATTGCACGGTAAAAATGAATGATGTGGTCTGTAGAAAGTCGGTAGATGAATGTGACTTTGTGGAGTACTGTAACGGAAAAGATCCCTATTGTGTCCCTAACACATATGCACGCAATGGGCAGTATTGTGAATCAGGTGAAGCCTTCTGTTTTGAAGGACGATGTCAGACTGCTGACAAGCAATGTATGAGCATGCTTGGGAAATACGTGAGAGGGGCTTCCTTTGCGTGCTATGAAGAGTTCAATTCCAGAGGCGATAGATTTGGCAACTGTATTCATAATTTTTGTGCTTTCAGAAATTCTCTCTGTGGGAAACTAATCTGTACGTGGCCATTCAAGAAGCTGGTGCTAAAAGCCAATTTATCTGTGGCCTATGCGCAAATCCGGGATGACTTGTGTGTAGCTATGTATAAAGGTGGGAGGATACCTAAGACAACAAAGACGACATATTCCAATCCAGCGGACAGAGATGAGACATTTGTAAACGACGGCACCATCTGTGGCCCTGATATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTCCAATCCAGCGGACAGAG
59.75
TGGTCTTCTGCATCTGTTTCCA
59.89
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGACATATTCCAATCCAGCGG
59.2
GCATCTGTTTCCACATCCGG
59.27
141
PCR template sequence:
AGGTGGGAGGATACCTAAGACAACAAAGACGACATATTCCAATCCAGCGGACAGAGATGAGACATTTGTAAACGACGGCACCATCTGTGGCCCTGATATGATCCTCAGAAAACCACCCTGCAGACAACTGTTCCTGAAAAGATCTCATCACCGGATGTGGAAACAGATGCAGAAGACCATATGGCTTATCTTATTACAAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
32
Interacting miRNAs (#binding sites)
mmu-miR-181d-5p(2), mmu-miR-23b-3p(1), mmu-miR-20b-5p(1), mmu-miR-15a-5p(1), mmu-miR-106a-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-429-3p(1), mmu-miR-375-3p(1), mmu-miR-200b-3p(1), mmu-miR-103-3p(1), mmu-miR-200c-3p(1), mmu-miR-101a-3p(1), mmu-miR-205-5p(1), mmu-miR-106b-5p(1), mmu-miR-146a-5p(1), mmu-miR-101b-3p(1), mmu-miR-23a-3p(1), mmu-miR-181b-5p(1), mmu-miR-433-5p(1), mmu-miR-153-3p(1), mmu-miR-125a-5p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-107-3p(1), mmu-miR-466d-3p(1), mmu-miR-207(1), mmu-miR-5101(1), mmu-miR-335-3p(1), mmu-miR-188-3p(1), mmu-miR-1199-5p(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGGCCCTGATATGATCCTCAGAAAAC
siRNA sets
TTTTCTGAGGATCATATCA,GTTTTCTGAGGATCATATC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADAM5_1769_ORF_1
0.6099
0.059593217
0.999873669
1791
ORF sequence:
ATGGCTTATCTTATTACAATAAATGAAACCCCCCATTTCATCCATCTTAAAAAACAATCATTTATAACTCCAACTGCAGTTGTTTATACTTACGACAGAAATGATGTTCAACATTCTCAACCTTTGTCAGCTCTGGAAAATTGCAATTACAATGGATATGTTGCAGGTTTCCCAAACTCTATCGTGACCCTCACCGTTTGCACAGGACTCAGGGGAATCATACAGTTTGAAAATGTCTCCTATGCAATCGAGCCCGTGGAAACCCTGTCAGGATTTGTGCACGTGATCTATGAGAACACAAACAAACATGCTGTGATTCCTGACCTGGGAAAGAATCAGTCATACAGTTGGTTTGACGAATCAGATTATCAATTCCGGAGTAACATGAAGAAATCTGGATTTACCGTGTTACGCCAACGATTCATTATGATGGATATCATCGTGGATAAAAAGCTGTTTGATTACATGGGTTCTGACACTGAAGTTGTGCTACAGAAAGTCATTCAGATCATCGGTTTCGTTAACACTATGCTCTCCAAGTTAAAACTGACTGTCTTAATAAATTCCATTGAAATCTGGTCGAAGGAAAACAGAATTCGTTTATCAAAGGCAGTTGATGACTTATTGGTTCAGTTCTCAATTTGGAAACATGAGTATAGATCACAACATGTTGCATACTTACTGGCATTTGAGGAGCACCCTGCTTCCACGGGGGCTCTATATCCAGGGAATCTGTGCAAACTGGAGTACAATGCTGCTGTTGCCCTGTATCCAAAAGGTTTATCGTTAGAATCGTTTAGTGTCATTGTCCTGCAGCTGCTGAGCATTGGTATGGGCTTAACTTACGACACTGAGAACTGCCACTGTACAGGAGAAGTTTGCCTAATGACGCCCAAAGCAATATATTCTGGGGGTGTGAAGGACTTCAGTACTTGTACCCTGGATGACTTTAAATACCTGTCAACAAGACAAGACCTTAGATGTCTCCAGGACTTGCCTTTGGAAAGAAAGCCAGCTCGCAGGCCAAGGAGAATCTGTGGCAATGGGATACTGGAGATGAACGAGCAATGTGACTGTGGCACTTTGAAGAACTGTACACATAGAAAATGCTGTGACCCTATGTCATGTCGATTGAAAAACAAGGCCACGTGTGGTTCTGGGGAGTGCTGTAGTCAAGATTGCACGGTAAAAATGAATGATGTGGTCTGTAGAAAGTCGGTAGATGAATGTGACTTTGTGGAGTACTGTAACGGAAAAGATCCCTATTGTGTCCCTAACACATATGCACGCAATGGGCAGTATTGTGAATCAGGTGAAGCCTTCTGTTTTGAAGGACGATGTCAGACTGCTGACAAGCAATGTATGAGCATGCTTGGGAAATACGTGAGAGGGGCTTCCTTTGCGTGCTATGAAGAGTTCAATTCCAGAGGCGATAGATTTGGCAACTGTATTCATAATTTTTGTGCTTTCAGAAATTCTCTCTGTGGGAAACTAATCTGTACGTGGCCATTCAAGAAGCTGGTGCTAAAAGCCAATTTATCTGTGGCCTATGCGCAAATCCGGGATGACTTGTGTGTAGCTATGTATAAAGGTGGGAGGATACCTAAGACAACAAAGACGACATATTCCAATCCAGCGGACAGAGATGAGACATTTGTAAACGACGGCACCATCTGTGGCCCTGATATGATCCTCAGAAAACCACCCTGCAGACAACTGTTCCTGAAAAGATCTCATCACCGGATGTGGAAACAGATGCAGAAGACCATATGGCTTATCTTATTACAATAA
Peptide sequence:
MAYLITINETPHFIHLKKQSFITPTAVVYTYDRNDVQHSQPLSALENCNYNGYVAGFPNSIVTLTVCTGLRGIIQFENVSYAIEPVETLSGFVHVIYENTNKHAVIPDLGKNQSYSWFDESDYQFRSNMKKSGFTVLRQRFIMMDIIVDKKLFDYMGSDTEVVLQKVIQIIGFVNTMLSKLKLTVLINSIEIWSKENRIRLSKAVDDLLVQFSIWKHEYRSQHVAYLLAFEEHPASTGALYPGNLCKLEYNAAVALYPKGLSLESFSVIVLQLLSIGMGLTYDTENCHCTGEVCLMTPKAIYSGGVKDFSTCTLDDFKYLSTRQDLRCLQDLPLERKPARRPRRICGNGILEMNEQCDCGTLKNCTHRKCCDPMSCRLKNKATCGSGECCSQDCTVKMNDVVCRKSVDECDFVEYCNGKDPYCVPNTYARNGQYCESGEAFCFEGRCQTADKQCMSMLGKYVRGASFACYEEFNSRGDRFGNCIHNFCAFRNSLCGKLICTWPFKKLVLKANLSVAYAQIRDDLCVAMYKGGRIPKTTKTTYSNPADRDETFVNDGTICGPDMILRKPPCRQLFLKRSHHRMWKQMQKTIWLILLQ
IRESfinder result
IRESfinder score
0.615339452
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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