top of page
mmu_circAdam32_2146
Basic information of circular RNA
PanCircBase ID:
mmu_circAdam32_2146
mm39_Chr. Position ID:
chr8|25342255|25428185|-
Gene name:
Adam32
Transcript:
ENSMUST00000121438.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
19
Exon/intron indexes:
20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,11149,12107,18446,20332,26481,32198,33981,46214,49202,50563,61719,62079,64048,67670,69048,70020,71825,85865
Genomic length:
85930
Exon/intron sizes in nt:
39,157,106,84,190,109,199,105,178,137,82,167,72,69,172,77,76,62,65
Flanking exon/introns:
chr8:25327837-25342255|chr8:25428185-25438735
Splice length:
2146
Other database IDs:
circAtlas: mmu-Adam32_0011
Human Ortholog IDs:
Mature spliced Sequence:
AGTCTCAAAGTTCATTTCTAGAAATCATATTTCCAGAGAAAATTGAAGATAAAACACACTCAGAAGAACAGATATCCTATATTATTCCAATAAACAAGAAGCAGTACACTGTGCACCTCCAGAAAAGATATTTTTTAACGAATCGTTTTATGGTTTATATGTATAATCAAGGATCTACAAGTTTTCATTCTCCAAACATTCCGGCTCAGTGCTATTATCAAGGACACATCAAAGGCTACCCGAACTCAGTCGCCACCCTCAGCACATGCTCTGGACTGAGAGGGTTCCTGCAGTTTGAGAATGTGTCCTACGGAATTGAGCCTCTGCAATCTGCATTTACATCTCAACACATTGTTTATAAGCTAGGGAACAAAGAGAAGGAGTTGATATTTAACAAAAACAGCAGAAACATAGAGATGCCTACAAACTATGGCATTTTAATCAACAAAAAGCCAAAATCACCTTTTAAAAACTTGTTTCCCCTCTATCTAGAGATGAGTATTGTGGTGGACAAAGCGCTGTATGATTACTTGGGCTCTGACAGCAATATTGTAACAAATAAAATCATTGAAATTATCAGTCTTATAAATTCAGTGTTTGCCCAACTCAAGGTTACTATCGTGTTGTCCTCATTGGAGTTGTGGTCAGATAAGAATAAGATTCCTACAGTTGGTGAAGCAGATGAATTATTGCATAAATTTCTAGAATGGAAGCAGGCCTACCTTACCCTAAGACCTCATGATGTTGCATATCTATTCATTTATAACGAGTACCCAAATTACATGGGAGCAACGTATCCTGGGAAGATGTGTACTGCCCACTACTCTGCAGGAATCACAATGTACCCCAAGGATATGACCTTGGAGGCCTTTTCGGTTATTCTCACCCAAATGCTGGGGCTCAGTCTGGGGATATCGTATGATGAGCCTGAGAAATGCTACTGCTCGGAATCCATCTGCATCATGAATCCCAGGGCGATGCAATATGGAGGTGTGAAGTCATTTAGCAATTGCAGTTTGAATGACTTTGAACATTTTAAATCGAACGAGGGTGCCAAATGTCTGCAGAATAAGCCACAGATGCAAAGGACTGCAGCAGCGGTCTGCGGAAATGGCAAGGTGGAGGGTGATGAAATTTGTGACTGTGGCTCTGAAGCAGAATGTGGGCCTGATAGCTGTTGTGAACCTAACAGATGTGTTCTGAAAGCAGGAAGAGCTTGTGACAGTAAGTCTCCCTCATCAACATGCTGCAAAAATTGTCAATTTTTACCAGAAAAACATCAATGTAGGCCGGAAAAGCATCTATACTGTGACATTCCTGAAGTCTGCAATGGGAGCTCAGGAAATTGTCCACCTGATGTAACTATAAACAATGGGCATGTTTGCAAAGAAAGCGGGACTATCTGTTATAATGGAGACTGTCCGGACCTGGACAGGGTGTGCGAGTCAATATATGGAGCAGGTTCAGTGAATGCTCCATTTGCCTGCTATGAAGAAATCCAGGGCCAAAATGATAGGTTTGGCAACTGTGGCAAAGACAACCGAAACAGATATGTGTTCTGTGGATGGAGGAATCTCATATGTGGGAGATTGATTTGTACGTACCCTACCCGAATGCCTTACAACCCACCCAATAACAGTACAGCTTCTGTGATCTATGCTTTTGTGCGAGACAAAGTGTGTATAACTGTGGACTTTGGATCGAGTGTCAAAGAAGATCCACTCAGGGTTGCTAATGGTGCTACATGTGATCTTGATAGGATCTGCTTAAATGGCGTGTGCGTAGAATCGAGATTTCTTAGGGATCAATCAAAAACGTGTTCATCCAAGTGCCACGGGAACGGAGTGTGCAATTCTCATGGTGTCTGCCACTGCAATGCCGGCTACTCACCTCCCAACTGTCAATATCCTACGACAAAAAGGTCAGCATCGCTGTGGTCTGGCAAGCACGATCTGCCCATGGAAAGAGCATCTAAGAACCAAGAAAAGAAGTGGCTTTTAAGTTTGTACATTGTCTTAATTATCCTCGCTTCAGTGTTCCTCATAGGCACAGGGTGGAAAGGCTTGAAACAGTGCGGTTCCAAGGAAGAGGAGTCCATGAGTAGCGAAAGCAAATCAGAAGACAGCACTTACACGTATGTCAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGTGCGGTTCCAAGGAAGAG
59.96
AGGATATCTGTTCTTCTGAGTGTGT
59.28
154
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AACAGTGCGGTTCCAAGGAA
60.11
AGGATATCTGTTCTTCTGAGTGTGT
59.28
157
PCR template sequence:
GCACAGGGTGGAAAGGCTTGAAACAGTGCGGTTCCAAGGAAGAGGAGTCCATGAGTAGCGAAAGCAAATCAGAAGACAGCACTTACACGTATGTCAGCAGAGTCTCAAAGTTCATTTCTAGAAATCATATTTCCAGAGAAAATTGAAGATAAAACACACTCAGAAGAACAGATATCCTATATTATTCCAATAAACAAGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
21
Interacting miRNAs (#binding sites)
mmu-miR-362-5p(3), mmu-miR-137-3p(1), mmu-miR-20b-5p(1), mmu-miR-1a-3p(1), mmu-miR-32-5p(1), mmu-miR-206-3p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-339-5p(1), mmu-miR-10a-5p(1), mmu-miR-128-3p(1), mmu-miR-24-3p(1), mmu-miR-351-5p(1), mmu-miR-541-5p(1), mmu-miR-342-5p(1), mmu-miR-129-5p(1), mmu-miR-452-3p(1), mmu-miR-188-3p(1), mmu-miR-350-3p(1), mmu-miR-3061-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CGTATGTCAGCAGAGTCTCAAAGTTC
siRNA sets
AACTTTGAGACTCTGCTGA, GAACTTTGAGACTCTGCTG, ACTTTGAGACTCTGCTGAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADAM32_2146_ORF_1
0.5928
0.034402482
0.999989282
2154
ORF sequence:
ATGTCAGCAGAGTCTCAAAGTTCATTTCTAGAAATCATATTTCCAGAGAAAATTGAAGATAAAACACACTCAGAAGAACAGATATCCTATATTATTCCAATAAACAAGAAGCAGTACACTGTGCACCTCCAGAAAAGATATTTTTTAACGAATCGTTTTATGGTTTATATGTATAATCAAGGATCTACAAGTTTTCATTCTCCAAACATTCCGGCTCAGTGCTATTATCAAGGACACATCAAAGGCTACCCGAACTCAGTCGCCACCCTCAGCACATGCTCTGGACTGAGAGGGTTCCTGCAGTTTGAGAATGTGTCCTACGGAATTGAGCCTCTGCAATCTGCATTTACATCTCAACACATTGTTTATAAGCTAGGGAACAAAGAGAAGGAGTTGATATTTAACAAAAACAGCAGAAACATAGAGATGCCTACAAACTATGGCATTTTAATCAACAAAAAGCCAAAATCACCTTTTAAAAACTTGTTTCCCCTCTATCTAGAGATGAGTATTGTGGTGGACAAAGCGCTGTATGATTACTTGGGCTCTGACAGCAATATTGTAACAAATAAAATCATTGAAATTATCAGTCTTATAAATTCAGTGTTTGCCCAACTCAAGGTTACTATCGTGTTGTCCTCATTGGAGTTGTGGTCAGATAAGAATAAGATTCCTACAGTTGGTGAAGCAGATGAATTATTGCATAAATTTCTAGAATGGAAGCAGGCCTACCTTACCCTAAGACCTCATGATGTTGCATATCTATTCATTTATAACGAGTACCCAAATTACATGGGAGCAACGTATCCTGGGAAGATGTGTACTGCCCACTACTCTGCAGGAATCACAATGTACCCCAAGGATATGACCTTGGAGGCCTTTTCGGTTATTCTCACCCAAATGCTGGGGCTCAGTCTGGGGATATCGTATGATGAGCCTGAGAAATGCTACTGCTCGGAATCCATCTGCATCATGAATCCCAGGGCGATGCAATATGGAGGTGTGAAGTCATTTAGCAATTGCAGTTTGAATGACTTTGAACATTTTAAATCGAACGAGGGTGCCAAATGTCTGCAGAATAAGCCACAGATGCAAAGGACTGCAGCAGCGGTCTGCGGAAATGGCAAGGTGGAGGGTGATGAAATTTGTGACTGTGGCTCTGAAGCAGAATGTGGGCCTGATAGCTGTTGTGAACCTAACAGATGTGTTCTGAAAGCAGGAAGAGCTTGTGACAGTAAGTCTCCCTCATCAACATGCTGCAAAAATTGTCAATTTTTACCAGAAAAACATCAATGTAGGCCGGAAAAGCATCTATACTGTGACATTCCTGAAGTCTGCAATGGGAGCTCAGGAAATTGTCCACCTGATGTAACTATAAACAATGGGCATGTTTGCAAAGAAAGCGGGACTATCTGTTATAATGGAGACTGTCCGGACCTGGACAGGGTGTGCGAGTCAATATATGGAGCAGGTTCAGTGAATGCTCCATTTGCCTGCTATGAAGAAATCCAGGGCCAAAATGATAGGTTTGGCAACTGTGGCAAAGACAACCGAAACAGATATGTGTTCTGTGGATGGAGGAATCTCATATGTGGGAGATTGATTTGTACGTACCCTACCCGAATGCCTTACAACCCACCCAATAACAGTACAGCTTCTGTGATCTATGCTTTTGTGCGAGACAAAGTGTGTATAACTGTGGACTTTGGATCGAGTGTCAAAGAAGATCCACTCAGGGTTGCTAATGGTGCTACATGTGATCTTGATAGGATCTGCTTAAATGGCGTGTGCGTAGAATCGAGATTTCTTAGGGATCAATCAAAAACGTGTTCATCCAAGTGCCACGGGAACGGAGTGTGCAATTCTCATGGTGTCTGCCACTGCAATGCCGGCTACTCACCTCCCAACTGTCAATATCCTACGACAAAAAGGTCAGCATCGCTGTGGTCTGGCAAGCACGATCTGCCCATGGAAAGAGCATCTAAGAACCAAGAAAAGAAGTGGCTTTTAAGTTTGTACATTGTCTTAATTATCCTCGCTTCAGTGTTCCTCATAGGCACAGGGTGGAAAGGCTTGAAACAGTGCGGTTCCAAGGAAGAGGAGTCCATGAGTAGCGAAAGCAAATCAGAAGACAGCACTTACACGTATGTCAGC
Peptide sequence:
MSAESQSSFLEIIFPEKIEDKTHSEEQISYIIPINKKQYTVHLQKRYFLTNRFMVYMYNQGSTSFHSPNIPAQCYYQGHIKGYPNSVATLSTCSGLRGFLQFENVSYGIEPLQSAFTSQHIVYKLGNKEKELIFNKNSRNIEMPTNYGILINKKPKSPFKNLFPLYLEMSIVVDKALYDYLGSDSNIVTNKIIEIISLINSVFAQLKVTIVLSSLELWSDKNKIPTVGEADELLHKFLEWKQAYLTLRPHDVAYLFIYNEYPNYMGATYPGKMCTAHYSAGITMYPKDMTLEAFSVILTQMLGLSLGISYDEPEKCYCSESICIMNPRAMQYGGVKSFSNCSLNDFEHFKSNEGAKCLQNKPQMQRTAAAVCGNGKVEGDEICDCGSEAECGPDSCCEPNRCVLKAGRACDSKSPSSTCCKNCQFLPEKHQCRPEKHLYCDIPEVCNGSSGNCPPDVTINNGHVCKESGTICYNGDCPDLDRVCESIYGAGSVNAPFACYEEIQGQNDRFGNCGKDNRNRYVFCGWRNLICGRLICTYPTRMPYNPPNNSTASVIYAFVRDKVCITVDFGSSVKEDPLRVANGATCDLDRICLNGVCVESRFLRDQSKTCSSKCHGNGVCNSHGVCHCNAGYSPPNCQYPTTKRSASLWSGKHDLPMERASKNQEKKWLLSLYIVLIILASVFLIGTGWKGLKQCGSKEEESMSSESKSEDSTYTYVS
IRESfinder result
IRESfinder score
0.559317222
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page