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mmu_circAdam22_288
Basic information of circular RNA
PanCircBase ID:
mmu_circAdam22_288
mm39_Chr. Position ID:
chr5|8202378|8217409|-
Gene name:
Adam22
Transcript:
ENSMUST00000050166.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
8,7,6,5
Exon/intron offsets:
0,6448,8357,14948
Genomic length:
15031
Exon/intron sizes in nt:
71,70,64,83
Flanking exon/introns:
chr5:8199282-8202378|chr5:8217409-8282609
Splice length:
288
Other database IDs:
circAtlas: mmu-Adam22_0043
circAtlas: hsa-ADAM22_0018
Human Ortholog IDs:
Mature spliced Sequence:
GGAGGAGAACACTGTTATTACCAGGGCCAGATTCGAGGAAACCCTGTCTCATTTGTTGCCCTATCAACATGCCATGGACTCCATGGGATGTTCTATGATGGAAACCACACATATCTCATTGAGCCAGAAGAAAATGAGAAGTCTCAAGAGTCGTCTCATTGTCACTCCGTGTACAAATCCAGACAGTTTGAATTTCCCTTGGATGACCTTCCGTCTGAATTTCAACGCGTAAACATTACTCCCCCTCAGTTTATTTTGAAGCCAAGACTAAAGAGGAGAAAAAGACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCTTGGATGACCTTCCGTC
60.11
TGGAGTCCATGGCATGTTGA
59.3
176
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTCCCTTGGATGACCTTCCG
59.38
AGGGTTTCCTCGAATCTGGC
59.75
140
PCR template sequence:
TGAATTTCCCTTGGATGACCTTCCGTCTGAATTTCAACGCGTAAACATTACTCCCCCTCAGTTTATTTTGAAGCCAAGACTAAAGAGGAGAAAAAGACAGGGAGGAGAACACTGTTATTACCAGGGCCAGATTCGAGGAAACCCTGTCTCATTTGTTGCCCTATCAACATGCCATGGACTCCATGGGATGTTCTATGATG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-29b-2-5p(1), mmu-miR-466a-5p(1), mmu-miR-466p-5p(1), mmu-miR-190b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GAGAAAAAGACAGGGAGGAGAACACT
siRNA sets
AGTGTTCTCCTCCCTGTCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADAM22_288_ORF_1
0.6363
0.019693713
0.386034309
489
ORF sequence:
ATGTTCTATGATGGAAACCACACATATCTCATTGAGCCAGAAGAAAATGAGAAGTCTCAAGAGTCGTCTCATTGTCACTCCGTGTACAAATCCAGACAGTTTGAATTTCCCTTGGATGACCTTCCGTCTGAATTTCAACGCGTAAACATTACTCCCCCTCAGTTTATTTTGAAGCCAAGACTAAAGAGGAGAAAAAGACAGGGAGGAGAACACTGTTATTACCAGGGCCAGATTCGAGGAAACCCTGTCTCATTTGTTGCCCTATCAACATGCCATGGACTCCATGGGATGTTCTATGATGGAAACCACACATATCTCATTGAGCCAGAAGAAAATGAGAAGTCTCAAGAGTCGTCTCATTGTCACTCCGTGTACAAATCCAGACAGTTTGAATTTCCCTTGGATGACCTTCCGTCTGAATTTCAACGCGTAAACATTACTCCCCCTCAGTTTATTTTGAAGCCAAGACTAAAGAGGAGAAAAAGACAG
Peptide sequence:
MFYDGNHTYLIEPEENEKSQESSHCHSVYKSRQFEFPLDDLPSEFQRVNITPPQFILKPRLKRRKRQGGEHCYYQGQIRGNPVSFVALSTCHGLHGMFYDGNHTYLIEPEENEKSQESSHCHSVYKSRQFEFPLDDLPSEFQRVNITPPQFILKPRLKRRKRQ
IRESfinder result
IRESfinder score
0.649791239
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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