top of page
mmu_circAdam10_1796
Basic information of circular RNA
PanCircBase ID:
mmu_circAdam10_1796
mm39_Chr. Position ID:
chr9|70625939|70676294|+
Gene name:
Adam10
Transcript:
ENSMUST00000140205.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
12
Exon/intron indexes:
3,4,5,6,7,8,9,10,11,12,13,14
Exon/intron offsets:
0,3955,21417,25193,27576,29425,35504,42925,47294,48240,49151,50134
Genomic length:
50355
Exon/intron sizes in nt:
11,91,59,10,11,53,93,10,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr9:70610719-70625939|chr9:70676294-70683654
Splice length:
1796
Other database IDs:
CIRCpedia: MMU_CIRCpedia_27569, circAtlas: mmu-Adam10_0032
circAtlas: hsa-ADAM10_0050, CIRCpedia: HSA_CIRCpedia_177076
Human Ortholog IDs:
Mature spliced Sequence:
ACAGTTCAACCTACGAATGAAGAGGGACACTTCCCTTTTTAGTGATGAATTTAAAGTAGAAACATCAAATAAAGTACTTGATTATGATACCTCTCATATTTACACTGGACATATTTATGGTGAAGAAGGAAGCTTTAGTCATGGGTCTGTCATTGATGGAAGATTTGAAGGTTTCATCAAGACTCGTGGTGGCACGTTTTACATTGAGCCAGCAGAGAGATACATTAAAGATCGAATCCTGCCATTTCACTCTGTCATTTATCATGAAGATGATATTAACTATCCCCATAAATACGGCCCACAGGGGGGCTGTGCAGATCACTCCGTTTTTGAAAGGATGAGGAAGTACCAAATGACTGGAGTAGAGGAAGGAGCCCGGGCACATCCAGAGAAGCATGCTGCTAGTAGTGGTCCTGAGCTCCTGAGGAAAAAACGCACAACTCTGGCTGAAAGAAATACTTGTCAGCTCTATATCCAGACAGATCACCTGTTCTTTAAATACTATGGAACACGAGAAGCTGTGATTGCTCAGATATCCAGTCATGTTAAAGCAATTGATACAATTTACCAGACTACAGACTTCTCCGGAATCCGTAACATCAGCTTCATGGTGAAACGCATAAGAATCAATACAACCTCTGATGAAAAAGACCCTACAAATCCTTTCCGTTTCCCAAATATTGGTGTGGAGAAGTTCCTGGAGTTGAATTCTGAGCAGAATCATGATGACTACTGCCTGGCCTATGTCTTCACAGACCGGGATTTTGATGATGGTGTTCTTGGTCTGGCCTGGGTTGGAGCACCTTCAGGAAGCTCTGGGGGAATATGTGAGAAAAGCAAGTTGTATTCAGATGGCAAGAAGAAGTCATTGAACACAGGCATCATTACTGTTCAGAACTATGGCTCCCATGTGCCTCCCAAAGTCTCTCATATTACGTTTGCTCATGAAGTTGGACATAACTTTGGATCTCCACATGATTCTGGAACAGAGTGTACTCCAGGAGAGTCTAAGAACTTAGGACAAAAAGAAAATGGCAATTACATCATGTATGCAAGAGCAACATCTGGGGACAAACTTAACAACAACAAATTTTCACTCTGCAGCATTAGAAACATAAGCCAAGTGCTTGAGAAGAAGAGGAACAACTGTTTTGTTGAATCTGGCCAGCCTATCTGTGGAAACGGGATGGTGGAACAAGGGGAAGAGTGTGACTGTGGCTACAGTGACCAGTGCAAAGATGATTGCTGCTTCGATGCCAACCAGCCAGAGGGGAAGAAATGCAAGCTGAAGCCTGGGAAGCAGTGCAGCACAGTGTGCATTCAAGTCAAAGTCTGAAAAGTGCCGGGATGATTCTGACTGTGCAAAGGAAGGGATATGCAATGGCTTCACAGCCCTTTGCCCAGCATCTGATCCCAAGCCCAACTTTACAGACTGTAACAGGCACACACAAGTGTGCATTAATGGGCAATGTGCAGGTTCTATTTGTGAAAAGTATGACTTGGAGGAGTGCACCTGTGCCAGCTCTGATGGCAAAGATGATAAGGAATTATGCCATGTTTGCTGCATGAAGAAAATGGCTCCATCAACTTGTGCCAGTACAGGCTCTTTGCAGTGGAGCAAGCAGTTCAGTGGTCGGACTATCACTCTGCAGCCGGGCTCTCCATGTAATGACTTCAGAGGCTACTGTGATGTTTTCATGCGGTGCAGATTAGTAGATGCTGATGGCCCTCTAGCTAGGCTGAAAAAAGCCATTTTTAGTCCACAACTCTATGAAAACATTGCTGAGTGGATTGTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCGGTGCAGATTAGTAGATGC
59.2
TCATCACTAAAAAGGGAAGTGTCC
58.69
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCGGTGCAGATTAGTAGATGC
59.2
TCACTAAAAAGGGAAGTGTCC
55.43
142
PCR template sequence:
CATGCGGTGCAGATTAGTAGATGCTGATGGCCCTCTAGCTAGGCTGAAAAAAGCCATTTTTAGTCCACAACTCTATGAAAACATTGCTGAGTGGATTGTGACAGTTCAACCTACGAATGAAGAGGGACACTTCCCTTTTTAGTGATGAATTTAAAGTAGAAACATCAAATAAAGTACTTGATTATGATACCTCTCATATT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
21
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(2), mmu-miR-322-5p(2), mmu-miR-155-5p(1), mmu-miR-15a-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-15b-5p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-18a-5p(1), mmu-miR-138-5p(1), mmu-miR-149-5p(1), mmu-miR-433-3p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-129-5p(1), mmu-miR-207(1), mmu-miR-673-5p(1), mmu-miR-669d-5p(1), mmu-miR-3065-5p(1), mmu-miR-3470b(1)
siRNAs for circular RNA silencing
Junction sequence
TGAGTGGATTGTGACAGTTCAACCTA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADAM10_1796_ORF_5
0.7686
0.032002405
0.142236013
273
ORF sequence:
ATGAAGAAAATGGCTCCATCAACTTGTGCCAGTACAGGCTCTTTGCAGTGGAGCAAGCAGTTCAGTGGTCGGACTATCACTCTGCAGCCGGGCTCTCCATGTAATGACTTCAGAGGCTACTGTGATGTTTTCATGCGGTGCAGATTAGTAGATGCTGATGGCCCTCTAGCTAGGCTGAAAAAAGCCATTTTTAGTCCACAACTCTATGAAAACATTGCTGAGTGGATTGTGACAGTTCAACCTACGAATGAAGAGGGACACTTCCCTTTTTAG
Peptide sequence:
MKKMAPSTCASTGSLQWSKQFSGRTITLQPGSPCNDFRGYCDVFMRCRLVDADGPLARLKKAIFSPQLYENIAEWIVTVQPTNEEGHFPF
IRESfinder result
IRESfinder score
0.542013958
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page