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mmu_circAdam10_1518
Basic information of circular RNA
PanCircBase ID:
mmu_circAdam10_1518
mm39_Chr. Position ID:
chr9|70647356|70676294|+
Gene name:
Adam10
Transcript:
ENSMUST00000140205.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
5,6,7,8,9,10,11,12,13,14
Exon/intron offsets:
0,3776,6159,8008,14087,21508,25877,26823,27734,28717
Genomic length:
28938
Exon/intron sizes in nt:
10,11,53,93,18,41,64,10,00,00,00,00,00,000
Flanking exon/introns:
chr9:70630053-70647356|chr9:70676294-70683654
Splice length:
1518
Other database IDs:
circAtlas: mmu-Adam10_0012
circAtlas: hsa-ADAM10_0008, CIRCpedia: HSA_CIRCpedia_83267
Human Ortholog IDs:
Mature spliced Sequence:
ACTATCCCCATAAATACGGCCCACAGGGGGGCTGTGCAGATCACTCCGTTTTTGAAAGGATGAGGAAGTACCAAATGACTGGAGTAGAGGAAGGAGCCCGGGCACATCCAGAGAAGCATGCTGCTAGTAGTGGTCCTGAGCTCCTGAGGAAAAAACGCACAACTCTGGCTGAAAGAAATACTTGTCAGCTCTATATCCAGACAGATCACCTGTTCTTTAAATACTATGGAACACGAGAAGCTGTGATTGCTCAGATATCCAGTCATGTTAAAGCAATTGATACAATTTACCAGACTACAGACTTCTCCGGAATCCGTAACATCAGCTTCATGGTGAAACGCATAAGAATCAATACAACCTCTGATGAAAAAGACCCTACAAATCCTTTCCGTTTCCCAAATATTGGTGTGGAGAAGTTCCTGGAGTTGAATTCTGAGCAGAATCATGATGACTACTGCCTGGCCTATGTCTTCACAGACCGGGATTTTGATGATGGTGTTCTTGGTCTGGCCTGGGTTGGAGCACCTTCAGGAAGCTCTGGGGGAATATGTGAGAAAAGCAAGTTGTATTCAGATGGCAAGAAGAAGTCATTGAACACAGGCATCATTACTGTTCAGAACTATGGCTCCCATGTGCCTCCCAAAGTCTCTCATATTACGTTTGCTCATGAAGTTGGACATAACTTTGGATCTCCACATGATTCTGGAACAGAGTGTACTCCAGGAGAGTCTAAGAACTTAGGACAAAAAGAAAATGGCAATTACATCATGTATGCAAGAGCAACATCTGGGGACAAACTTAACAACAACAAATTTTCACTCTGCAGCATTAGAAACATAAGCCAAGTGCTTGAGAAGAAGAGGAACAACTGTTTTGTTGAATCTGGCCAGCCTATCTGTGGAAACGGGATGGTGGAACAAGGGGAAGAGTGTGACTGTGGCTACAGTGACCAGTGCAAAGATGATTGCTGCTTCGATGCCAACCAGCCAGAGGGGAAGAAATGCAAGCTGAAGCCTGGGAAGCAGTGCAGCACAGTGTGCATTCAAGTCAAAGTCTGAAAAGTGCCGGGATGATTCTGACTGTGCAAAGGAAGGGATATGCAATGGCTTCACAGCCCTTTGCCCAGCATCTGATCCCAAGCCCAACTTTACAGACTGTAACAGGCACACACAAGTGTGCATTAATGGGCAATGTGCAGGTTCTATTTGTGAAAAGTATGACTTGGAGGAGTGCACCTGTGCCAGCTCTGATGGCAAAGATGATAAGGAATTATGCCATGTTTGCTGCATGAAGAAAATGGCTCCATCAACTTGTGCCAGTACAGGCTCTTTGCAGTGGAGCAAGCAGTTCAGTGGTCGGACTATCACTCTGCAGCCGGGCTCTCCATGTAATGACTTCAGAGGCTACTGTGATGTTTTCATGCGGTGCAGATTAGTAGATGCTGATGGCCCTCTAGCTAGGCTGAAAAAAGCCATTTTTAGTCCACAACTCTATGAAAACATTGCTGAGTGGATTGTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTGATGGCCCTCTAGCTA
60.11
GGGCTCCTTCCTCTACTCCA
60.03
178
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GATGCTGATGGCCCTCTAGC
60.32
GGGCTCCTTCCTCTACTCCA
60.03
180
PCR template sequence:
CATGCGGTGCAGATTAGTAGATGCTGATGGCCCTCTAGCTAGGCTGAAAAAAGCCATTTTTAGTCCACAACTCTATGAAAACATTGCTGAGTGGATTGTGACTATCCCCATAAATACGGCCCACAGGGGGGCTGTGCAGATCACTCCGTTTTTGAAAGGATGAGGAAGTACCAAATGACTGGAGTAGAGGAAGGAGCCCG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
20
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(2), mmu-miR-322-5p(2), mmu-miR-155-5p(1), mmu-miR-15a-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-15b-5p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-18a-5p(1), mmu-miR-138-5p(1), mmu-miR-433-3p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-129-5p(1), mmu-miR-207(1), mmu-miR-673-5p(1), mmu-miR-669d-5p(1), mmu-miR-3065-5p(1), mmu-miR-3470b(1)
siRNAs for circular RNA silencing
Junction sequence
TGAGTGGATTGTGACTATCCCCATAA
siRNA sets
GATAGTCACAATCCACTCA,TATGGGGATAGTCACAATC,TTATGGGGATAGTCACAAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADAM10_1518_ORF_3
0.8231
0.052684944
0.19055757
294
ORF sequence:
ATGAAGAAAATGGCTCCATCAACTTGTGCCAGTACAGGCTCTTTGCAGTGGAGCAAGCAGTTCAGTGGTCGGACTATCACTCTGCAGCCGGGCTCTCCATGTAATGACTTCAGAGGCTACTGTGATGTTTTCATGCGGTGCAGATTAGTAGATGCTGATGGCCCTCTAGCTAGGCTGAAAAAAGCCATTTTTAGTCCACAACTCTATGAAAACATTGCTGAGTGGATTGTGACTATCCCCATAAATACGGCCCACAGGGGGGCTGTGCAGATCACTCCGTTTTTGAAAGGATGA
Peptide sequence:
MKKMAPSTCASTGSLQWSKQFSGRTITLQPGSPCNDFRGYCDVFMRCRLVDADGPLARLKKAIFSPQLYENIAEWIVTIPINTAHRGAVQITPFLKG
IRESfinder result
IRESfinder score
0.453076832
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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