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mmu_circActn2_1041
Basic information of circular RNA
PanCircBase ID:
mmu_circActn2_1041
mm39_Chr. Position ID:
chr13|12295314|12315902|-
Gene name:
Actn2
Transcript:
ENSMUST00000064204.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
14,13,12,11,10,9,8,7
Exon/intron offsets:
0,2086,8078,10245,11231,13881,16046,20506
Genomic length:
20588
Exon/intron sizes in nt:
141,109,151,148,231,93,86,82
Flanking exon/introns:
chr13:12293862-12295314|chr13:12315902-12319199
Splice length:
1041
Other database IDs:
CIRCpedia: MMU_CIRCpedia_225697
Human Ortholog IDs:
Mature spliced Sequence:
GATGACCCCATAGGAAACATTAACCTGGCCATGGAAATAGCAGAGAAGCACTTGGATATCCCTAAGATGTTGGATGCTGAAGACATTGTCAACACTCCCAAACCCGATGAAAGAGCCATCATGACTTACGTTTCCTGCTTCTACCATGCTTTCGCGGGAGCGGAGCAGGCCGAGACAGCAGCTAACAGAATATGTAAGGTTCTTGCTGTGAATCAAGAGAATGAGAGGCTGATGGAAGAATATGAGAGGCTAGCGAGTGAGCTGTTGGAGTGGATTCGGCGCACAATCCCCTGGCTGGAGAACAGGACGCCTGAGAAGACCATGCAGGCCATGCAGAAGAAGCTGGAGGACTTCCGGGATTACCGTCGTAAGCATAAGCCCCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGCTTCGGATCAGCAACCGGCCCGCCTTCATGCCCTCCGAGGGCAAGATGGTGTCGGACATTGCTGGTGCCTGGCAGAGGTTGGAGCAGGCTGAGAAGGGCTATGAGGAGTGGCTATTGAATGAGATTCGAAGACTGGAGCGCTTGGAGCACTTGGCTGAGAAGTTCAGGCAGAAGGCCTCCACGCACGAGACATGGGCTTATGGCAAAGAACAGATCTTGCTGCAGAAGGACTACGAGTCTGCGTCCCTGACGGAAGTTCGAGCCCTACTTCGGAAGCACGAGGCCTTTGAGAGCGACCTGGCTGCACACCAGGACCGCGTGGAGCAGATCGCTGCCATTGCGCAGGAGCTCAATGAACTGGACTATCACGATGCTGTGAACGTCAATGATCGGTGCCAGAAAATTTGCGACCAGTGGGATAGATTGGGGACGCTCACCCAGAAGAGGAGGGAGGCCTTGGAGAGAACTGAGAAGTTGCTGGAAACAATCGACCAACTGCACCTGGAGTTTGCCAAGAGAGCCGCGCCCTTCAACAACTGGATGGAGGGAGCCATGGAGGACCTGCAGGACATGTTCATTGTCCACAGCATCGAGGAGATCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGAGTTTGCCAAGAGAGCCG
61.3
TGCTATTTCCATGGCCAGGT
59.37
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGAGTTTGCCAAGAGAGCCG
61.3
TGCTATTTCCATGGCCAGGTT
59.99
142
PCR template sequence:
GGAGTTTGCCAAGAGAGCCGCGCCCTTCAACAACTGGATGGAGGGAGCCATGGAGGACCTGCAGGACATGTTCATTGTCCACAGCATCGAGGAGATCCAGGATGACCCCATAGGAAACATTAACCTGGCCATGGAAATAGCAGAGAAGCACTTGGATATCCCTAAGATGTTGGATGCTGAAGACATTGTCAACACTCCCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-122-5p(1), mmu-miR-433-3p(1), mmu-miR-431-5p(1), mmu-miR-27a-5p(1), mmu-miR-207(1)
siRNAs for circular RNA silencing
Junction sequence
CGAGGAGATCCAGGATGACCCCATAG
siRNA sets
GTCATCCTGGATCTCCTCG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCACTN2_1041_ORF_1
1.2607
0.54741477
0.999999247
2052
ORF sequence:
ATGGAAATAGCAGAGAAGCACTTGGATATCCCTAAGATGTTGGATGCTGAAGACATTGTCAACACTCCCAAACCCGATGAAAGAGCCATCATGACTTACGTTTCCTGCTTCTACCATGCTTTCGCGGGAGCGGAGCAGGCCGAGACAGCAGCTAACAGAATATGTAAGGTTCTTGCTGTGAATCAAGAGAATGAGAGGCTGATGGAAGAATATGAGAGGCTAGCGAGTGAGCTGTTGGAGTGGATTCGGCGCACAATCCCCTGGCTGGAGAACAGGACGCCTGAGAAGACCATGCAGGCCATGCAGAAGAAGCTGGAGGACTTCCGGGATTACCGTCGTAAGCATAAGCCCCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGCTTCGGATCAGCAACCGGCCCGCCTTCATGCCCTCCGAGGGCAAGATGGTGTCGGACATTGCTGGTGCCTGGCAGAGGTTGGAGCAGGCTGAGAAGGGCTATGAGGAGTGGCTATTGAATGAGATTCGAAGACTGGAGCGCTTGGAGCACTTGGCTGAGAAGTTCAGGCAGAAGGCCTCCACGCACGAGACATGGGCTTATGGCAAAGAACAGATCTTGCTGCAGAAGGACTACGAGTCTGCGTCCCTGACGGAAGTTCGAGCCCTACTTCGGAAGCACGAGGCCTTTGAGAGCGACCTGGCTGCACACCAGGACCGCGTGGAGCAGATCGCTGCCATTGCGCAGGAGCTCAATGAACTGGACTATCACGATGCTGTGAACGTCAATGATCGGTGCCAGAAAATTTGCGACCAGTGGGATAGATTGGGGACGCTCACCCAGAAGAGGAGGGAGGCCTTGGAGAGAACTGAGAAGTTGCTGGAAACAATCGACCAACTGCACCTGGAGTTTGCCAAGAGAGCCGCGCCCTTCAACAACTGGATGGAGGGAGCCATGGAGGACCTGCAGGACATGTTCATTGTCCACAGCATCGAGGAGATCCAGGATGACCCCATAGGAAACATTAACCTGGCCATGGAAATAGCAGAGAAGCACTTGGATATCCCTAAGATGTTGGATGCTGAAGACATTGTCAACACTCCCAAACCCGATGAAAGAGCCATCATGACTTACGTTTCCTGCTTCTACCATGCTTTCGCGGGAGCGGAGCAGGCCGAGACAGCAGCTAACAGAATATGTAAGGTTCTTGCTGTGAATCAAGAGAATGAGAGGCTGATGGAAGAATATGAGAGGCTAGCGAGTGAGCTGTTGGAGTGGATTCGGCGCACAATCCCCTGGCTGGAGAACAGGACGCCTGAGAAGACCATGCAGGCCATGCAGAAGAAGCTGGAGGACTTCCGGGATTACCGTCGTAAGCATAAGCCCCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGCTTCGGATCAGCAACCGGCCCGCCTTCATGCCCTCCGAGGGCAAGATGGTGTCGGACATTGCTGGTGCCTGGCAGAGGTTGGAGCAGGCTGAGAAGGGCTATGAGGAGTGGCTATTGAATGAGATTCGAAGACTGGAGCGCTTGGAGCACTTGGCTGAGAAGTTCAGGCAGAAGGCCTCCACGCACGAGACATGGGCTTATGGCAAAGAACAGATCTTGCTGCAGAAGGACTACGAGTCTGCGTCCCTGACGGAAGTTCGAGCCCTACTTCGGAAGCACGAGGCCTTTGAGAGCGACCTGGCTGCACACCAGGACCGCGTGGAGCAGATCGCTGCCATTGCGCAGGAGCTCAATGAACTGGACTATCACGATGCTGTGAACGTCAATGATCGGTGCCAGAAAATTTGCGACCAGTGGGATAGATTGGGGACGCTCACCCAGAAGAGGAGGGAGGCCTTGGAGAGAACTGAGAAGTTGCTGGAAACAATCGACCAACTGCACCTGGAGTTTGCCAAGAGAGCCGCGCCCTTCAACAACTGGATGGAGGGAGCCATGGAGGACCTGCAGGACATGTTCATTGTCCACAGCATCGAGGAGATCCAG
Peptide sequence:
MEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERTEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERTEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQ
IRESfinder result
IRESfinder score
0.232707255
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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