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mmu_circAcsl5_519
Basic information of circular RNA
PanCircBase ID:
mmu_circAcsl5_519
mm39_Chr. Position ID:
chr19|55277236|55282162|+
Gene name:
Acsl5
Transcript:
ENSMUST00000043150.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
14,15,16,17,18
Exon/intron offsets:
0,2341,2613,2968,4782
Genomic length:
4926
Exon/intron sizes in nt:
9,67,38,91,17,144
Flanking exon/introns:
chr19:55276394-55277236|chr19:55282162-55282633
Splice length:
519
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GGAAGCCTGGGGGGGAAGGTTCGCCTCATGATCACTGGAGCCGCCCCCATCTCCACTCCAGTCTTGACATTCTTCAGGGCTGCAATGGGATGTTGGGTGTTTGAAGCTTATGGCCAAACAGAATGCACAGGTGGATGTTCAATTACATCACCTGGGGACTGGACAGCAGGTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAGATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCAAATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAGGAGCAGACCAGTATTGCA
60.07
ACACCCAACATCCCATTGCA
60.18
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGGAGCAGACCAGTATTGCA
58.72
ACACCCAACATCCCATTGCA
60.18
148
PCR template sequence:
GTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGGGGAAGCCTGGGGGGGAAGGTTCGCCTCATGATCACTGGAGCCGCCCCCATCTCCACTCCAGTCTTGACATTCTTCAGGGCTGCAATGGGATGTTGGGTGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-199a-5p(1), mmu-miR-429-3p(1), mmu-miR-326-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GGAGAGCTTACGGGGAAGCCTGGGGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCACSL5_519_ORF_1
0.8166
0.135261122
0.98369631
1011
ORF sequence:
ATGATCACTGGAGCCGCCCCCATCTCCACTCCAGTCTTGACATTCTTCAGGGCTGCAATGGGATGTTGGGTGTTTGAAGCTTATGGCCAAACAGAATGCACAGGTGGATGTTCAATTACATCACCTGGGGACTGGACAGCAGGTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAGATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCAAATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGGGGAAGCCTGGGGGGGAAGGTTCGCCTCATGATCACTGGAGCCGCCCCCATCTCCACTCCAGTCTTGACATTCTTCAGGGCTGCAATGGGATGTTGGGTGTTTGAAGCTTATGGCCAAACAGAATGCACAGGTGGATGTTCAATTACATCACCTGGGGACTGGACAGCAGGTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAGATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCAAATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG
Peptide sequence:
MITGAAPISTPVLTFFRAAMGCWVFEAYGQTECTGGCSITSPGDWTAGHVGTPVACNFVKLEDVADMNYFSVNNEGEICIKGNNVFKGYLKDPEKTQEVLDKDGWLHTGDIGRWLPNGTLKIVDRKKNIFKLAQGEYIAPEKIENVYSRSRPVLQVFVHGESLRGSLGGKVRLMITGAAPISTPVLTFFRAAMGCWVFEAYGQTECTGGCSITSPGDWTAGHVGTPVACNFVKLEDVADMNYFSVNNEGEICIKGNNVFKGYLKDPEKTQEVLDKDGWLHTGDIGRWLPNGTLKIVDRKKNIFKLAQGEYIAPEKIENVYSRSRPVLQVFVHGESLR
IRESfinder result
IRESfinder score
0.531716127
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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