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mmu_circAcsf3_1384
Basic information of circular RNA
PanCircBase ID:
mmu_circAcsf3_1384
mm39_Chr. Position ID:
chr8|123506684|123529380|+
Gene name:
Acsf3
Transcript:
ENSMUST00000015160.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
2,3,4,5,6,7
Exon/intron offsets:
0,1487,4001,5873,10644,22569
Genomic length:
22696
Exon/intron sizes in nt:
6,90,15,61,55,14,61,10,000
Flanking exon/introns:
chr8:123502329-123506684|chr8:123529380-123539733
Splice length:
1384
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CCCAGCCAGTGGTTTGTCGGTGTGATGCCACCTCACTTGGCACTGCCCTTCAGGCGTCTCTTCTGGTCCTTGGCCTCCAGTCAGCTGATTCCCAGAAGACACCGAGGACATAGCCTCCTGCCTACCACCCCAGAGGCCCACACGGATGGGAGTGTCCCGGTATTCATCCGTGCCCTGGCCTTTGGGGACAGGATTGCCCTTATTGACAAATATGGCCATCACACCTACAGGGAACTGTATGATCGCAGCCTTTGTCTGGCCCAGGAGATCTGCAGGCTTCAGGGTTGTAAAGTTGGGGACCTCCAGGAAGAAAGGGTCTCCTTCCTGTGCTCCAATGACGTCTCCTACGTTGTAGCACAGTGGGCCTCCTGGATGAGTGGTGGTGTTGCTGTCCCACTGTACTGGAAGCACCCTGAGGCCCAGCTGGAGTATTTCATCCAGGACTCCCGGAGCTCTTTGGTGGTGGTTGGCCAGGAGTACTTGGAGCGGCTAAGTCCACTGGCTCAGAGGCTGGGAGTCCCTCTTCTGCCGCTCACGCCTGCCGTCTACCATGGAGCAACAGAGAAGCCCACAGAGCAGCCAGTTGAAGAGAGTGGGTGGCGTGACCGGGGTGCCATGATCTTCTACACCAGCGGGACCACAGGGAGGCCCAAGGGTGCACTGAGCACCCACCGTAACCTAGCCGCTGTGGTGACTGGGCTGGTCCACTCATGGGCGTGGACTAAAAACGATGTGATCCTTCACGTCCTCCCGCTGCACCATGTCCACGGCGTGGTCAACAAGCTGCTCTGTCCACTCTGGGTAGGAGCCACCTGTGTCATGCTGCCGGAGTTCAGTGCTCAGCAGGTTTGGGAAAAATTCTTGAGTTCTGAAGCCCCACAGATTACCGTATTCATGGCAGTGCCCACTGTCTACAGCAAGCTGCTGGACTACTATGACAAGCATTTCACGCAGCCCCATGTCCAGGATTTTGTGCGTGCAGTTTGTAAAGAAAGAATCAGGCTGATGGTCTCAGGTTCGGCCGCTCTGCCTGTCCCACTGCTGGAGAAGTGGAGGAGCGCCACGGGCCACACGCTGCTGGAGCGCTATGGCATGACAGAGATCGGCATGGCTCTGTCCAACCCCCTGACGGAGGCTCGCGTGCCAGGTTCTGTGGGGACCCCATTGCCAGGAGTGGAAGTACGCATCATCTCAGAAAACCCGCAGAAGGGTTCCCCCTACATCATCCATGCAGAGGGAAACGAGAGGGGGACAAAGGTGACTCCAGGGTTCGAGGAAAAGGAAGGGGAGCTGCTGGTTAGGGGACCCTCGGTGTTCCGAGAATACTGGGATAAGCCAGAAGAAACGAAAAGTGCTTTCACTTCCGATGGCTGGTTCAGAACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAGCTGCTGGTTAGGGGAC
59.78
GGCCAAGGACCAGAAGAGAC
60.04
172
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAGCTGCTGGTTAGGGGAC
59.78
CAGAAGAGACGCCTGAAGGG
60.11
162
PCR template sequence:
GGGGAGCTGCTGGTTAGGGGACCCTCGGTGTTCCGAGAATACTGGGATAAGCCAGAAGAAACGAAAAGTGCTTTCACTTCCGATGGCTGGTTCAGAACAGCCCAGCCAGTGGTTTGTCGGTGTGATGCCACCTCACTTGGCACTGCCCTTCAGGCGTCTCTTCTGGTCCTTGGCCTCCAGTCAGCTGATTCCCAGAAGAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
14
Interacting miRNAs (#binding sites)
mmu-miR-370-3p(2), mmu-miR-103-3p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-203-3p(1), mmu-miR-143-3p(1), mmu-miR-138-5p(1), mmu-miR-125a-5p(1), mmu-miR-182-5p(1), mmu-miR-425-5p(1), mmu-miR-34b-5p(1), mmu-miR-107-3p(1), mmu-miR-27a-5p(1), mmu-miR-802-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGGTTCAGAACAGCCCAGCCAGTGGT
siRNA sets
ACTGGCTGGGCTGTTCTGA, CACTGGCTGGGCTGTTCTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCACSF3_1384_ORF_1
1.0234
0.286669826
0.999774526
1473
ORF sequence:
ATGCCACCTCACTTGGCACTGCCCTTCAGGCGTCTCTTCTGGTCCTTGGCCTCCAGTCAGCTGATTCCCAGAAGACACCGAGGACATAGCCTCCTGCCTACCACCCCAGAGGCCCACACGGATGGGAGTGTCCCGGTATTCATCCGTGCCCTGGCCTTTGGGGACAGGATTGCCCTTATTGACAAATATGGCCATCACACCTACAGGGAACTGTATGATCGCAGCCTTTGTCTGGCCCAGGAGATCTGCAGGCTTCAGGGTTGTAAAGTTGGGGACCTCCAGGAAGAAAGGGTCTCCTTCCTGTGCTCCAATGACGTCTCCTACGTTGTAGCACAGTGGGCCTCCTGGATGAGTGGTGGTGTTGCTGTCCCACTGTACTGGAAGCACCCTGAGGCCCAGCTGGAGTATTTCATCCAGGACTCCCGGAGCTCTTTGGTGGTGGTTGGCCAGGAGTACTTGGAGCGGCTAAGTCCACTGGCTCAGAGGCTGGGAGTCCCTCTTCTGCCGCTCACGCCTGCCGTCTACCATGGAGCAACAGAGAAGCCCACAGAGCAGCCAGTTGAAGAGAGTGGGTGGCGTGACCGGGGTGCCATGATCTTCTACACCAGCGGGACCACAGGGAGGCCCAAGGGTGCACTGAGCACCCACCGTAACCTAGCCGCTGTGGTGACTGGGCTGGTCCACTCATGGGCGTGGACTAAAAACGATGTGATCCTTCACGTCCTCCCGCTGCACCATGTCCACGGCGTGGTCAACAAGCTGCTCTGTCCACTCTGGGTAGGAGCCACCTGTGTCATGCTGCCGGAGTTCAGTGCTCAGCAGGTTTGGGAAAAATTCTTGAGTTCTGAAGCCCCACAGATTACCGTATTCATGGCAGTGCCCACTGTCTACAGCAAGCTGCTGGACTACTATGACAAGCATTTCACGCAGCCCCATGTCCAGGATTTTGTGCGTGCAGTTTGTAAAGAAAGAATCAGGCTGATGGTCTCAGGTTCGGCCGCTCTGCCTGTCCCACTGCTGGAGAAGTGGAGGAGCGCCACGGGCCACACGCTGCTGGAGCGCTATGGCATGACAGAGATCGGCATGGCTCTGTCCAACCCCCTGACGGAGGCTCGCGTGCCAGGTTCTGTGGGGACCCCATTGCCAGGAGTGGAAGTACGCATCATCTCAGAAAACCCGCAGAAGGGTTCCCCCTACATCATCCATGCAGAGGGAAACGAGAGGGGGACAAAGGTGACTCCAGGGTTCGAGGAAAAGGAAGGGGAGCTGCTGGTTAGGGGACCCTCGGTGTTCCGAGAATACTGGGATAAGCCAGAAGAAACGAAAAGTGCTTTCACTTCCGATGGCTGGTTCAGAACAGCCCAGCCAGTGGTTTGTCGGTGTGATGCCACCTCACTTGGCACTGCCCTTCAGGCGTCTCTTCTGGTCCTTGGCCTCCAGTCAGCTGATTCCCAGAAGACACCGAGGACATAG
Peptide sequence:
MPPHLALPFRRLFWSLASSQLIPRRHRGHSLLPTTPEAHTDGSVPVFIRALAFGDRIALIDKYGHHTYRELYDRSLCLAQEICRLQGCKVGDLQEERVSFLCSNDVSYVVAQWASWMSGGVAVPLYWKHPEAQLEYFIQDSRSSLVVVGQEYLERLSPLAQRLGVPLLPLTPAVYHGATEKPTEQPVEESGWRDRGAMIFYTSGTTGRPKGALSTHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQQVWEKFLSSEAPQITVFMAVPTVYSKLLDYYDKHFTQPHVQDFVRAVCKERIRLMVSGSAALPVPLLEKWRSATGHTLLERYGMTEIGMALSNPLTEARVPGSVGTPLPGVEVRIISENPQKGSPYIIHAEGNERGTKVTPGFEEKEGELLVRGPSVFREYWDKPEETKSAFTSDGWFRTAQPVVCRCDATSLGTALQASLLVLGLQSADSQKTPRT
IRESfinder result
IRESfinder score
0.372849064
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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