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mmu_circAcrbp_463
Basic information of circular RNA
PanCircBase ID:
mmu_circAcrbp_463
mm39_Chr. Position ID:
chr6|125030452|125030915|+
Gene name:
Acrbp
Transcript:
ENSMUST00000088294.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
463
Exon/intron sizes in nt:
463
Flanking exon/introns:
chr6:125028323-125030452|chr6:125030915-125031635
Splice length:
463
Other database IDs:
CIRCpedia: MMU_CIRCpedia_218979, circAtlas: mmu-Acrbp_0002
Human Ortholog IDs:
Mature spliced Sequence:
CCACAGAACACCAGGCCTTCCAGCCTTGGCCTGAGCGGCTCAACAACAACGTGGAGGAGCTGCTGCAGTCATCCTTGTCCCTGGGAGGCAAGGACCAACAGAGCAGTCGGAGACCAGGCCAGGAGCAGCGCAAGCAGGAGCAGATCCAAGAACATAAGCTAGAAGAAGCGCAGGAGCAAGAAGAGCAGGAAGAAGAGGAAGAGGAGGAGGAAGCCAAGCAGGAAGAGGGGCAGGGGACAGAGGCGGGTCTGGAGTCAGTGTCCAGGCTGCAGTCAGACTCAGAGCCCAAGTTTCAATCCCAGTCACTGTCTTCCAACCCGTCCTTCTTCACTCCCCGGGTCCGAGAGGTGGAGTCTGCTCCATTGATGATGAAGAATATCCAGGAGCTCATTCGGTCTGCCCAGGAAATGGATGAAATGAATGAACTGTATGATGACTCCTGGAGAAGCCAAAGCACTGGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGGAGCTCATTCGGTCTG
60.18
TCCCAGGGACAAGGATGACT
59.88
170
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGGAGCTCATTCGGTCTG
60.18
AGCTCCTCCACGTTGTTGTT
59.82
145
PCR template sequence:
TGATGATGAAGAATATCCAGGAGCTCATTCGGTCTGCCCAGGAAATGGATGAAATGAATGAACTGTATGATGACTCCTGGAGAAGCCAAAGCACTGGCAGCCACAGAACACCAGGCCTTCCAGCCTTGGCCTGAGCGGCTCAACAACAACGTGGAGGAGCTGCTGCAGTCATCCTTGTCCCTGGGAGGCAAGGACCAACA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-134-5p(1), mmu-miR-7b-5p(1), mmu-miR-7a-5p(1), mmu-miR-207(1)
siRNAs for circular RNA silencing
Junction sequence
AAAGCACTGGCAGCCACAGAACACCA
siRNA sets
TTCTGTGGCTGCCAGTGCT, TGTTCTGTGGCTGCCAGTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCACRBP_463_ORF_1
0.9891
0.480363279
0.898038755
504
ORF sequence:
ATGAACTGTATGATGACTCCTGGAGAAGCCAAAGCACTGGCAGCCACAGAACACCAGGCCTTCCAGCCTTGGCCTGAGCGGCTCAACAACAACGTGGAGGAGCTGCTGCAGTCATCCTTGTCCCTGGGAGGCAAGGACCAACAGAGCAGTCGGAGACCAGGCCAGGAGCAGCGCAAGCAGGAGCAGATCCAAGAACATAAGCTAGAAGAAGCGCAGGAGCAAGAAGAGCAGGAAGAAGAGGAAGAGGAGGAGGAAGCCAAGCAGGAAGAGGGGCAGGGGACAGAGGCGGGTCTGGAGTCAGTGTCCAGGCTGCAGTCAGACTCAGAGCCCAAGTTTCAATCCCAGTCACTGTCTTCCAACCCGTCCTTCTTCACTCCCCGGGTCCGAGAGGTGGAGTCTGCTCCATTGATGATGAAGAATATCCAGGAGCTCATTCGGTCTGCCCAGGAAATGGATGAAATGAATGAACTGTATGATGACTCCTGGAGAAGCCAAAGCACTGGC
Peptide sequence:
MNCMMTPGEAKALAATEHQAFQPWPERLNNNVEELLQSSLSLGGKDQQSSRRPGQEQRKQEQIQEHKLEEAQEQEEQEEEEEEEEAKQEEGQGTEAGLESVSRLQSDSEPKFQSQSLSSNPSFFTPRVREVESAPLMMKNIQELIRSAQEMDEMNELYDDSWRSQSTG
IRESfinder result
IRESfinder score
0.300669788
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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