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mmu_circAcrbp_463

Basic information of circular RNA
PanCircBase ID:

mmu_circAcrbp_463

mm39_Chr. Position ID:

chr6|125030452|125030915|+

Gene name:

Acrbp

Transcript:

ENSMUST00000088294.12

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

1

Exon/intron indexes:

5

Exon/intron offsets:

0

Genomic length:

463

Exon/intron sizes in nt:

463

Flanking exon/introns:

chr6:125028323-125030452|chr6:125030915-125031635

Splice length:

463

Other database IDs:

CIRCpedia: MMU_CIRCpedia_218979, circAtlas: mmu-Acrbp_0002

Human Ortholog IDs:
Mature spliced Sequence:

CCACAGAACACCAGGCCTTCCAGCCTTGGCCTGAGCGGCTCAACAACAACGTGGAGGAGCTGCTGCAGTCATCCTTGTCCCTGGGAGGCAAGGACCAACAGAGCAGTCGGAGACCAGGCCAGGAGCAGCGCAAGCAGGAGCAGATCCAAGAACATAAGCTAGAAGAAGCGCAGGAGCAAGAAGAGCAGGAAGAAGAGGAAGAGGAGGAGGAAGCCAAGCAGGAAGAGGGGCAGGGGACAGAGGCGGGTCTGGAGTCAGTGTCCAGGCTGCAGTCAGACTCAGAGCCCAAGTTTCAATCCCAGTCACTGTCTTCCAACCCGTCCTTCTTCACTCCCCGGGTCCGAGAGGTGGAGTCTGCTCCATTGATGATGAAGAATATCCAGGAGCTCATTCGGTCTGCCCAGGAAATGGATGAAATGAATGAACTGTATGATGACTCCTGGAGAAGCCAAAGCACTGGCAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

CCAGGAGCTCATTCGGTCTG

60.18

TCCCAGGGACAAGGATGACT

59.88

170

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

CCAGGAGCTCATTCGGTCTG

60.18

AGCTCCTCCACGTTGTTGTT

59.82

145

PCR template sequence:

TGATGATGAAGAATATCCAGGAGCTCATTCGGTCTGCCCAGGAAATGGATGAAATGAATGAACTGTATGATGACTCCTGGAGAAGCCAAAGCACTGGCAGCCACAGAACACCAGGCCTTCCAGCCTTGGCCTGAGCGGCTCAACAACAACGTGGAGGAGCTGCTGCAGTCATCCTTGTCCCTGGGAGGCAAGGACCAACA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

4

Interacting miRNAs (#binding sites)

mmu-miR-134-5p(1), mmu-miR-7b-5p(1), mmu-miR-7a-5p(1), mmu-miR-207(1)

siRNAs for circular RNA silencing
Junction sequence

AAAGCACTGGCAGCCACAGAACACCA

siRNA sets

TTCTGTGGCTGCCAGTGCT, TGTTCTGTGGCTGCCAGTG

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCACRBP_463_ORF_1

0.9891

0.480363279

0.898038755

504

ORF sequence:

ATGAACTGTATGATGACTCCTGGAGAAGCCAAAGCACTGGCAGCCACAGAACACCAGGCCTTCCAGCCTTGGCCTGAGCGGCTCAACAACAACGTGGAGGAGCTGCTGCAGTCATCCTTGTCCCTGGGAGGCAAGGACCAACAGAGCAGTCGGAGACCAGGCCAGGAGCAGCGCAAGCAGGAGCAGATCCAAGAACATAAGCTAGAAGAAGCGCAGGAGCAAGAAGAGCAGGAAGAAGAGGAAGAGGAGGAGGAAGCCAAGCAGGAAGAGGGGCAGGGGACAGAGGCGGGTCTGGAGTCAGTGTCCAGGCTGCAGTCAGACTCAGAGCCCAAGTTTCAATCCCAGTCACTGTCTTCCAACCCGTCCTTCTTCACTCCCCGGGTCCGAGAGGTGGAGTCTGCTCCATTGATGATGAAGAATATCCAGGAGCTCATTCGGTCTGCCCAGGAAATGGATGAAATGAATGAACTGTATGATGACTCCTGGAGAAGCCAAAGCACTGGC

Peptide sequence:

MNCMMTPGEAKALAATEHQAFQPWPERLNNNVEELLQSSLSLGGKDQQSSRRPGQEQRKQEQIQEHKLEEAQEQEEQEEEEEEEEAKQEEGQGTEAGLESVSRLQSDSEPKFQSQSLSSNPSFFTPRVREVESAPLMMKNIQELIRSAQEMDEMNELYDDSWRSQSTG

IRESfinder result

IRESfinder score

0.300669788

IRES/non IRES

non-IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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