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mmu_circAcadvl_244
Basic information of circular RNA
PanCircBase ID:
mmu_circAcadvl_244
mm39_Chr. Position ID:
chr11|69901674|69902091|-
Gene name:
Acadvl
Transcript:
ENSMUST00000102574.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
17,16,15
Exon/intron offsets:
0,157,319
Genomic length:
417
Exon/intron sizes in nt:
73,73,98
Flanking exon/introns:
chr11:69901596-69901674|chr11:69902091-69902170
Splice length:
244
Other database IDs:
circAtlas: hsa-ACADVL_0001, CIRCpedia: HSA_CIRCpedia_77632
Human Ortholog IDs:
Mature spliced Sequence:
GACAAAGGAAAGGAACTCACTGGGCTGGGCAATGCCCTGAAGAATCCTTTTGGAAACGTTGGCCTCCTGATGGGAGAAGCAGGCAAACAGCTGAGACGGAGGACAGGAATCGGCAGTGGTTTGAGTCTGTCAGGGATTGTCCACCCAGAGTTAAGTCGCAGTGGTGAACTGGCAGTGCAGGCTCTGGATCAATTTGCCACCGTGGTGGAGGCCAAGCTGGTGAAACACAAGAAAGGGATTGTCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAGTGCAGGCTCTGGATCAA
60.04
TTGCCTGCTTCTCCCATCAG
60.03
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGTGCAGGCTCTGGATCAA
60.04
AGGAGGCCAACGTTTCCAAA
60.11
140
PCR template sequence:
CCAGAGTTAAGTCGCAGTGGTGAACTGGCAGTGCAGGCTCTGGATCAATTTGCCACCGTGGTGGAGGCCAAGCTGGTGAAACACAAGAAAGGGATTGTCAGACAAAGGAAAGGAACTCACTGGGCTGGGCAATGCCCTGAAGAATCCTTTTGGAAACGTTGGCCTCCTGATGGGAGAAGCAGGCAAACAGCTGAGACGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-211-5p(1), mmu-miR-484(1)
siRNAs for circular RNA silencing
Junction sequence
AAAGGGATTGTCAGACAAAGGAAAGG
siRNA sets
TTTCCTTTGTCTGACAATC,TTCCTTTGTCTGACAATCC,TCCTTTGTCTGACAATCCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCACADVL_244_ORF_1
0.5837
0.118386008
0.228451626
342
ORF sequence:
ATGGGAGAAGCAGGCAAACAGCTGAGACGGAGGACAGGAATCGGCAGTGGTTTGAGTCTGTCAGGGATTGTCCACCCAGAGTTAAGTCGCAGTGGTGAACTGGCAGTGCAGGCTCTGGATCAATTTGCCACCGTGGTGGAGGCCAAGCTGGTGAAACACAAGAAAGGGATTGTCAGACAAAGGAAAGGAACTCACTGGGCTGGGCAATGCCCTGAAGAATCCTTTTGGAAACGTTGGCCTCCTGATGGGAGAAGCAGGCAAACAGCTGAGACGGAGGACAGGAATCGGCAGTGGTTTGAGTCTGTCAGGGATTGTCCACCCAGAGTTAAGTCGCAGTGGTGA
Peptide sequence:
MGEAGKQLRRRTGIGSGLSLSGIVHPELSRSGELAVQALDQFATVVEAKLVKHKKGIVRQRKGTHWAGQCPEESFWKRWPPDGRSRQTAETEDRNRQWFESVRDCPPRVKSQW
IRESfinder result
IRESfinder score
0.329491208
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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