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mmu_circAcadsb_321
Basic information of circular RNA
PanCircBase ID:
mmu_circAcadsb_321
mm39_Chr. Position ID:
chr7|131035998|131043068|+
Gene name:
Acadsb
Transcript:
ENSMUST00000015829.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
7,8,9
Exon/intron offsets:
0,3132,6932
Genomic length:
7070
Exon/intron sizes in nt:
93,90,138
Flanking exon/introns:
chr7:131033791-131035998|chr7:131043068-131045197
Splice length:
321
Other database IDs:
CIRCpedia: MMU_CIRCpedia_217275
Human Ortholog IDs:
Mature spliced Sequence:
GTTCCAGAGACTAATATTTTGGGGAAAATTGGGCATGGTTATAAGTATGCCATAGGAAGTCTTAATGAAGGTAGAATCGGAATTGCTGCACAGATGCTAGGACTGGCCCAAGGATGTTTTGACTACACTATTCCATACATTAAAGAAAGGATGCAGTTTGGCAAACGAATATTTGATTTTCAGGGGCTCCAACACCAAGTGGCTCAGGTGGCCACCCAGCTGGAAGCCACACGGTTGCTAACATACAACGCTGCTAGGCTCGTAGAAGCCGGAAGGCCATTTATAAAAGAAGCATCTATGGCCAAATATTATGCATCTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGCTAGGCTCGTAGAAGCC
59.97
CATCTGTGCAGCAATTCCGA
58.91
167
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATACAACGCTGCTAGGCTCG
60.25
CATCTGTGCAGCAATTCCGA
58.91
175
PCR template sequence:
GGAAGCCACACGGTTGCTAACATACAACGCTGCTAGGCTCGTAGAAGCCGGAAGGCCATTTATAAAAGAAGCATCTATGGCCAAATATTATGCATCTGAGGTTCCAGAGACTAATATTTTGGGGAAAATTGGGCATGGTTATAAGTATGCCATAGGAAGTCTTAATGAAGGTAGAATCGGAATTGCTGCACAGATGCTAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-322-5p(1), mmu-miR-362-5p(1), mmu-miR-297a-5p(1), mmu-miR-499-5p(1), mmu-miR-697(1)
siRNAs for circular RNA silencing
Junction sequence
TTATGCATCTGAGGTTCCAGAGACTA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCACADSB_321_ORF_1
0.9305
0.060850136
0.664369354
549
ORF sequence:
ATGCTAGGACTGGCCCAAGGATGTTTTGACTACACTATTCCATACATTAAAGAAAGGATGCAGTTTGGCAAACGAATATTTGATTTTCAGGGGCTCCAACACCAAGTGGCTCAGGTGGCCACCCAGCTGGAAGCCACACGGTTGCTAACATACAACGCTGCTAGGCTCGTAGAAGCCGGAAGGCCATTTATAAAAGAAGCATCTATGGCCAAATATTATGCATCTGAGGTTCCAGAGACTAATATTTTGGGGAAAATTGGGCATGGTTATAAGTATGCCATAGGAAGTCTTAATGAAGGTAGAATCGGAATTGCTGCACAGATGCTAGGACTGGCCCAAGGATGTTTTGACTACACTATTCCATACATTAAAGAAAGGATGCAGTTTGGCAAACGAATATTTGATTTTCAGGGGCTCCAACACCAAGTGGCTCAGGTGGCCACCCAGCTGGAAGCCACACGGTTGCTAACATACAACGCTGCTAGGCTCGTAGAAGCCGGAAGGCCATTTATAAAAGAAGCATCTATGGCCAAATATTATGCATCTGAG
Peptide sequence:
MLGLAQGCFDYTIPYIKERMQFGKRIFDFQGLQHQVAQVATQLEATRLLTYNAARLVEAGRPFIKEASMAKYYASEVPETNILGKIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERMQFGKRIFDFQGLQHQVAQVATQLEATRLLTYNAARLVEAGRPFIKEASMAKYYASE
IRESfinder result
IRESfinder score
0.317011382
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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