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mmu_circAcad11_424
Basic information of circular RNA
PanCircBase ID:
mmu_circAcad11_424
mm39_Chr. Position ID:
chr9|103967456|103974651|+
Gene name:
Acad11
Transcript:
ENSMUST00000120854.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
10,11,12,13
Exon/intron offsets:
0,1334,5263,7096
Genomic length:
7195
Exon/intron sizes in nt:
78,139,108,99
Flanking exon/introns:
chr9:103961486-103967456|chr9:103974651-103990660
Splice length:
424
Other database IDs:
circAtlas: mmu-Acad11_0005
circAtlas: hsa-NPHP3-ACAD11_0005, CIRCpedia: HSA_CIRCpedia_105641
Human Ortholog IDs:
Mature spliced Sequence:
GAAGTAGCTGAATACTATGCTCAAAGTGGAAACTCAGCGGAAAAGTGGGGACACCCCTTAGTGATCGAAAAACTAAAGGAAATAGCCAAAGCAGAGGGCCTGTGGAATTTGTTCTTGCCAGCTGTGAGCGGTCTCAGCCAGGTGGACTATGCCTTGATTGCTGAAGAGACAGGAAAATGCTTTTTTGCTCCAGATGTTTTTAACTGCCAAGCACCAGACACAGGCAACATGGAGGTACTGCACCTGTATGGCAGCGAGCAGCAGAAGAAGCAGTGGCTGGAGCCTCTCCTGCGTGGCGATATCACCTCCGTCTTCTGTATGACAGAGCCCAACGTCTCATCAAGCGATGCCACGAACATCGAATGCACCATCCAGAGAGATGGAGGTGGCTATATAGTTAACGGCAAGAAGTGGTGGAGCAGCG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCACGAACATCGAATGCACC
59.9
GGCCCTCTGCTTTGGCTATT
60.4
175
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATGCCACGAACATCGAATGC
59.62
GGCCCTCTGCTTTGGCTATT
60.4
178
PCR template sequence:
GAGCCCAACGTCTCATCAAGCGATGCCACGAACATCGAATGCACCATCCAGAGAGATGGAGGTGGCTATATAGTTAACGGCAAGAAGTGGTGGAGCAGCGGAAGTAGCTGAATACTATGCTCAAAGTGGAAACTCAGCGGAAAAGTGGGGACACCCCTTAGTGATCGAAAAACTAAAGGAAATAGCCAAAGCAGAGGGCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-136-5p(1), mmu-miR-182-5p(1), mmu-miR-1904(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGGTGGAGCAGCGGAAGTAGCTGAAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCACAD11_424_ORF_1
0.8898
0.388203595
0.371152761
207
ORF sequence:
ATGGAGGTACTGCACCTGTATGGCAGCGAGCAGCAGAAGAAGCAGTGGCTGGAGCCTCTCCTGCGTGGCGATATCACCTCCGTCTTCTGTATGACAGAGCCCAACGTCTCATCAAGCGATGCCACGAACATCGAATGCACCATCCAGAGAGATGGAGGTGGCTATATAGTTAACGGCAAGAAGTGGTGGAGCAGCGGAAGTAGCTGA
Peptide sequence:
MEVLHLYGSEQQKKQWLEPLLRGDITSVFCMTEPNVSSSDATNIECTIQRDGGGYIVNGKKWWSSGSS
IRESfinder result
IRESfinder score
0.348641114
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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