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mmu_circAcaca_903
Basic information of circular RNA
PanCircBase ID:
mmu_circAcaca_903
mm39_Chr. Position ID:
chr11|84211351|84237641|+
Gene name:
Acaca
Transcript:
ENSMUST00000103201.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
40,41,42,43,44,45
Exon/intron offsets:
0,1957,17788,21401,25440,26179
Genomic length:
26290
Exon/intron sizes in nt:
15,61,47,27,09,81,21,100
Flanking exon/introns:
chr11:84206803-84211351|chr11:84237641-84254489
Splice length:
903
Other database IDs:
CIRCpedia: MMU_CIRCpedia_227233
circBase: hsa_circ_0106695, circAtlas: hsa-ACACA_0024, CIRCpedia: HSA_CIRCpedia_20322
Human Ortholog IDs:
Mature spliced Sequence:
ATCATGTTTCAGGCATATGGAGACAAGCAGGGACCACTGCATGGAATGTTAATTAATACTCCATATGTGACCAAAGACCTTCTTCAATCAAAGAGGTTCCAGGCACAGTCCTTAGGAACAACATATATATATGATATCCCAGAGATGTTTCGGCAGTCACTCATCAAACTCTGGGAGTCCATGTCCACCCAAGCATTTCTTCCTTCGCCTCCTTTGCCTTCCGACATCCTGACGTATACTGAACTGGTGTTGGATGATCAAGGCCAGCTGGTCCATATGAACAGACTTCCAGGAGGAAATGAGATTGGCATGGTAGCCTGGAAAATGAGCCTTAAAAGCCCTGAATATCCAGATGGCCGAGATATCATTGTCATCGGCAATGACATTACATATCGGATCGGTTCCTTTGGGCCTCAGGAGGATTTGCTGTTTCTCAGAGCTTCTGAACTTGCCAGAGCAGAAGGCATCCCACGCATCTACGTGGCAGCGAACAGTGGAGCTAGAATTGGACTTGCAGAAGAAATACGCCATATGTTCCATGTGGCCTGGGTAGATCCTGAAGATCCCTACAAGGGATACAAGTATTTATATCTGACACCCCAGGATTATAAGAGAGTCAGTGCCCTCAATTCTGTCCACTGTGAACATGTGGAGGATGAAGGGGAATCCAGGTACAAGATAACAGATATTATCGGGAAAGAAGAAGGACTTGGAGCAGAGAACCTTCGGGGTTCTGGAATGATTGCTGGGGAATCCTCATTGGCTTACGATGAGGTCATCACCATCAGCCTGGTTACATGCCGGGCCATTGGTATTGGGGCTTACCTTGTCCGGCTGGGACAAAGAACCATCCAGGTTGAGAATTCTCACTTAATTCTGACAGGAGCAGGTGCCCTCAACAAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATTGGGGCTTACCTTGTCCG
60.03
AGGTCTTTGGTCACATATGGAGT
59.15
170
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATTGGGGCTTACCTTGTCCG
60.03
TGAAGAAGGTCTTTGGTCACA
57.08
176
PCR template sequence:
GGCCATTGGTATTGGGGCTTACCTTGTCCGGCTGGGACAAAGAACCATCCAGGTTGAGAATTCTCACTTAATTCTGACAGGAGCAGGTGCCCTCAACAAAATCATGTTTCAGGCATATGGAGACAAGCAGGGACCACTGCATGGAATGTTAATTAATACTCCATATGTGACCAAAGACCTTCTTCAATCAAAGAGGTTCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-205-5p(1), mmu-miR-128-3p(1), mmu-miR-494-3p(1), mmu-miR-190b-5p(1), mmu-miR-490-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGCCCTCAACAAAATCATGTTTCAGG
siRNA sets
AAACATGATTTTGTTGAGG, GAAACATGATTTTGTTGAG, ACATGATTTTGTTGAGGGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCACACA_903_ORF_1
1.0421
0.212272566
0.999973319
1803
ORF sequence:
ATGTTTCAGGCATATGGAGACAAGCAGGGACCACTGCATGGAATGTTAATTAATACTCCATATGTGACCAAAGACCTTCTTCAATCAAAGAGGTTCCAGGCACAGTCCTTAGGAACAACATATATATATGATATCCCAGAGATGTTTCGGCAGTCACTCATCAAACTCTGGGAGTCCATGTCCACCCAAGCATTTCTTCCTTCGCCTCCTTTGCCTTCCGACATCCTGACGTATACTGAACTGGTGTTGGATGATCAAGGCCAGCTGGTCCATATGAACAGACTTCCAGGAGGAAATGAGATTGGCATGGTAGCCTGGAAAATGAGCCTTAAAAGCCCTGAATATCCAGATGGCCGAGATATCATTGTCATCGGCAATGACATTACATATCGGATCGGTTCCTTTGGGCCTCAGGAGGATTTGCTGTTTCTCAGAGCTTCTGAACTTGCCAGAGCAGAAGGCATCCCACGCATCTACGTGGCAGCGAACAGTGGAGCTAGAATTGGACTTGCAGAAGAAATACGCCATATGTTCCATGTGGCCTGGGTAGATCCTGAAGATCCCTACAAGGGATACAAGTATTTATATCTGACACCCCAGGATTATAAGAGAGTCAGTGCCCTCAATTCTGTCCACTGTGAACATGTGGAGGATGAAGGGGAATCCAGGTACAAGATAACAGATATTATCGGGAAAGAAGAAGGACTTGGAGCAGAGAACCTTCGGGGTTCTGGAATGATTGCTGGGGAATCCTCATTGGCTTACGATGAGGTCATCACCATCAGCCTGGTTACATGCCGGGCCATTGGTATTGGGGCTTACCTTGTCCGGCTGGGACAAAGAACCATCCAGGTTGAGAATTCTCACTTAATTCTGACAGGAGCAGGTGCCCTCAACAAAATCATGTTTCAGGCATATGGAGACAAGCAGGGACCACTGCATGGAATGTTAATTAATACTCCATATGTGACCAAAGACCTTCTTCAATCAAAGAGGTTCCAGGCACAGTCCTTAGGAACAACATATATATATGATATCCCAGAGATGTTTCGGCAGTCACTCATCAAACTCTGGGAGTCCATGTCCACCCAAGCATTTCTTCCTTCGCCTCCTTTGCCTTCCGACATCCTGACGTATACTGAACTGGTGTTGGATGATCAAGGCCAGCTGGTCCATATGAACAGACTTCCAGGAGGAAATGAGATTGGCATGGTAGCCTGGAAAATGAGCCTTAAAAGCCCTGAATATCCAGATGGCCGAGATATCATTGTCATCGGCAATGACATTACATATCGGATCGGTTCCTTTGGGCCTCAGGAGGATTTGCTGTTTCTCAGAGCTTCTGAACTTGCCAGAGCAGAAGGCATCCCACGCATCTACGTGGCAGCGAACAGTGGAGCTAGAATTGGACTTGCAGAAGAAATACGCCATATGTTCCATGTGGCCTGGGTAGATCCTGAAGATCCCTACAAGGGATACAAGTATTTATATCTGACACCCCAGGATTATAAGAGAGTCAGTGCCCTCAATTCTGTCCACTGTGAACATGTGGAGGATGAAGGGGAATCCAGGTACAAGATAACAGATATTATCGGGAAAGAAGAAGGACTTGGAGCAGAGAACCTTCGGGGTTCTGGAATGATTGCTGGGGAATCCTCATTGGCTTACGATGAGGTCATCACCATCAGCCTGGTTACATGCCGGGCCATTGGTATTGGGGCTTACCTTGTCCGGCTGGGACAAAGAACCATCCAGGTTGAGAATTCTCACTTAATTCTGACAGGAGCAGGTGCCCTCAACAAA
Peptide sequence:
MFQAYGDKQGPLHGMLINTPYVTKDLLQSKRFQAQSLGTTYIYDIPEMFRQSLIKLWESMSTQAFLPSPPLPSDILTYTELVLDDQGQLVHMNRLPGGNEIGMVAWKMSLKSPEYPDGRDIIVIGNDITYRIGSFGPQEDLLFLRASELARAEGIPRIYVAANSGARIGLAEEIRHMFHVAWVDPEDPYKGYKYLYLTPQDYKRVSALNSVHCEHVEDEGESRYKITDIIGKEEGLGAENLRGSGMIAGESSLAYDEVITISLVTCRAIGIGAYLVRLGQRTIQVENSHLILTGAGALNKIMFQAYGDKQGPLHGMLINTPYVTKDLLQSKRFQAQSLGTTYIYDIPEMFRQSLIKLWESMSTQAFLPSPPLPSDILTYTELVLDDQGQLVHMNRLPGGNEIGMVAWKMSLKSPEYPDGRDIIVIGNDITYRIGSFGPQEDLLFLRASELARAEGIPRIYVAANSGARIGLAEEIRHMFHVAWVDPEDPYKGYKYLYLTPQDYKRVSALNSVHCEHVEDEGESRYKITDIIGKEEGLGAENLRGSGMIAGESSLAYDEVITISLVTCRAIGIGAYLVRLGQRTIQVENSHLILTGAGALNK
IRESfinder result
IRESfinder score
0.577802838
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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