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mmu_circAbhd5_459
Basic information of circular RNA
PanCircBase ID:
mmu_circAbhd5_459
mm39_Chr. Position ID:
chr9|122194200|122197326|+
Gene name:
Abhd5
Transcript:
ENSMUST00000156520.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
2,3
Exon/intron offsets:
0,2753
Genomic length:
3126
Exon/intron sizes in nt:
86,373
Flanking exon/introns:
chr9:122180904-122194200|chr9:122197326-122204970
Splice length:
459
Other database IDs:
CIRCpedia: MMU_CIRCpedia_5754, circAtlas: mmu-Abhd5_0006
circAtlas: hsa-ABHD5_0001
Human Ortholog IDs:
Mature spliced Sequence:
GTCAGGATGGCTGACAGGGTGGCTTCCTACCTGGTGTCCCACATCTACATCACACCTTAAAGAAGCTGAAGAGAAAATGTTAAAATGTGTCCCCTGCACTTACAAGAAAGAGCCTGTGCGCATATCCAATGGAAACAGAATATGGACGCTGATGTTCTCTCACAACATTTCTAGTAAGACGCCACTTGTCCTCCTTCATGGTTTTGGAGGAGGTCTTGGACTTTGGGCCCTGAATTTTGAAGATCTAAGCACCGATAGGCCTGTCTATGCCTTTGACCTATTGGGCTTCGGAAGAAGTAGTAGACCTAGGTTTGACAGTGATGCGGAAGAAGTGGAGAATCAGTTTGTGGAATCCATTGAAGAGTGGAGATGTGCCCTCAGGTTGGACAAAATGATCTTGCTTGGACACAACCTGGGAGGGTTCTTGGCTGCCGCTTACTCACTGAAGTACCCATCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGTGGAGATGTGCCCTCA
60.25
TGGGACACCAGGTAGGAAGC
61.2
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGAGTGGAGATGTGCCCTC
59.09
TGGGACACCAGGTAGGAAGC
61.2
141
PCR template sequence:
AAGAGTGGAGATGTGCCCTCAGGTTGGACAAAATGATCTTGCTTGGACACAACCTGGGAGGGTTCTTGGCTGCCGCTTACTCACTGAAGTACCCATCAAGGTCAGGATGGCTGACAGGGTGGCTTCCTACCTGGTGTCCCACATCTACATCACACCTTAAAGAAGCTGAAGAGAAAATGTTAAAATGTGTCCCCTGCACT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
AGTACCCATCAAGGTCAGGATGGCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCABHD5_459_ORF_1
0.5198
0.055883544
0.879979083
840
ORF sequence:
ATGTTAAAATGTGTCCCCTGCACTTACAAGAAAGAGCCTGTGCGCATATCCAATGGAAACAGAATATGGACGCTGATGTTCTCTCACAACATTTCTAGTAAGACGCCACTTGTCCTCCTTCATGGTTTTGGAGGAGGTCTTGGACTTTGGGCCCTGAATTTTGAAGATCTAAGCACCGATAGGCCTGTCTATGCCTTTGACCTATTGGGCTTCGGAAGAAGTAGTAGACCTAGGTTTGACAGTGATGCGGAAGAAGTGGAGAATCAGTTTGTGGAATCCATTGAAGAGTGGAGATGTGCCCTCAGGTTGGACAAAATGATCTTGCTTGGACACAACCTGGGAGGGTTCTTGGCTGCCGCTTACTCACTGAAGTACCCATCAAGGTCAGGATGGCTGACAGGGTGGCTTCCTACCTGGTGTCCCACATCTACATCACACCTTAAAGAAGCTGAAGAGAAAATGTTAAAATGTGTCCCCTGCACTTACAAGAAAGAGCCTGTGCGCATATCCAATGGAAACAGAATATGGACGCTGATGTTCTCTCACAACATTTCTAGTAAGACGCCACTTGTCCTCCTTCATGGTTTTGGAGGAGGTCTTGGACTTTGGGCCCTGAATTTTGAAGATCTAAGCACCGATAGGCCTGTCTATGCCTTTGACCTATTGGGCTTCGGAAGAAGTAGTAGACCTAGGTTTGACAGTGATGCGGAAGAAGTGGAGAATCAGTTTGTGGAATCCATTGAAGAGTGGAGATGTGCCCTCAGGTTGGACAAAATGATCTTGCTTGGACACAACCTGGGAGGGTTCTTGGCTGCCGCTTACTCACTGAAGTACCCATCA
Peptide sequence:
MLKCVPCTYKKEPVRISNGNRIWTLMFSHNISSKTPLVLLHGFGGGLGLWALNFEDLSTDRPVYAFDLLGFGRSSRPRFDSDAEEVENQFVESIEEWRCALRLDKMILLGHNLGGFLAAAYSLKYPSRSGWLTGWLPTWCPTSTSHLKEAEEKMLKCVPCTYKKEPVRISNGNRIWTLMFSHNISSKTPLVLLHGFGGGLGLWALNFEDLSTDRPVYAFDLLGFGRSSRPRFDSDAEEVENQFVESIEEWRCALRLDKMILLGHNLGGFLAAAYSLKYPS
IRESfinder result
IRESfinder score
0.57367584
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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