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mmu_circAbhd16a_343
Basic information of circular RNA
PanCircBase ID:
mmu_circAbhd16a_343
mm39_Chr. Position ID:
chr17|35319310|35320322|+
Gene name:
Abhd16a
Transcript:
ENSMUST00000007251.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
10,11,12,13
Exon/intron offsets:
0,304,627,907
Genomic length:
1012
Exon/intron sizes in nt:
64,50,124,105
Flanking exon/introns:
chr17:35317976-35319310|chr17:35320322-35320517
Splice length:
343
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTCATCTGCTGTGAGGGGAATGCAGGATTCTATGAGGTGGGCTGTGTCTCCACACCCCTAGAAGCTGGCTATTCTGTCCTGGGCTGGAATCATCCAGGCTTTGCAGGAAGCACGGGGGTACCATTCCCACAGAACGAGGCCAATGCCATGGATGTGGTGGTTCAGTTTGCCATCCACCGCCTGGGCTTCCAGCCCCAGGACATTGTCATCTACGCCTGGTCCATTGGAGGCTTCACTGCCACGTGGGCAGCCATGTCCTACCCAGACATCAGTGCTGTTATCCTGGACGCCTCCTTCGATGACTTGGTGCCCCTGGCCTTGAAGGTCATGCCGGACAGCTGGC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGTTATCCTGGACGCCTCC
59.89
TAGCCAGCTTCTAGGGGTGT
59.96
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGTGCTGTTATCCTGGACGC
60.11
TAGCCAGCTTCTAGGGGTGT
59.96
144
PCR template sequence:
TGGGCAGCCATGTCCTACCCAGACATCAGTGCTGTTATCCTGGACGCCTCCTTCGATGACTTGGTGCCCCTGGCCTTGAAGGTCATGCCGGACAGCTGGCGTCATCTGCTGTGAGGGGAATGCAGGATTCTATGAGGTGGGCTGTGTCTCCACACCCCTAGAAGCTGGCTATTCTGTCCTGGGCTGGAATCATCCAGGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-34c-5p(1), mmu-miR-34b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCGGACAGCTGGCGTCATCTGCTGTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCABHD16A_343_ORF_1
1.2928
0.515148395
0.682795132
210
ORF sequence:
ATGGATGTGGTGGTTCAGTTTGCCATCCACCGCCTGGGCTTCCAGCCCCAGGACATTGTCATCTACGCCTGGTCCATTGGAGGCTTCACTGCCACGTGGGCAGCCATGTCCTACCCAGACATCAGTGCTGTTATCCTGGACGCCTCCTTCGATGACTTGGTGCCCCTGGCCTTGAAGGTCATGCCGGACAGCTGGCGTCATCTGCTGTGA
Peptide sequence:
MDVVVQFAIHRLGFQPQDIVIYAWSIGGFTATWAAMSYPDISAVILDASFDDLVPLALKVMPDSWRHLL
IRESfinder result
IRESfinder score
0.310267295
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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