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mmu_circAbcc8_863
Basic information of circular RNA
PanCircBase ID:
mmu_circAbcc8_863
mm39_Chr. Position ID:
chr7|45815342|45828007|-
Gene name:
Abcc8
Transcript:
ENSMUST00000033123.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
6,5,4,3,2
Exon/intron offsets:
0,974,3905,9441,12523
Genomic length:
12665
Exon/intron sizes in nt:
18,92,43,16,71,22,142
Flanking exon/introns:
chr7:45806695-45815342|chr7:45828007-45829225
Splice length:
863
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GATGGGGCAGCCAGAGCTCCAAGGTACACATTCACCATAGCACCTGGCTCCATTTCCCTGGCCACAACCTGCGCTGGATCCTTACCTTCATGCTGCTCTTTGTCCTGGTGTGTGAGATCGCTGAGGGTATCCTGTCTGATGGGGTGACAGAATCCCGCCACCTCCATTTGTACATGCCAGCTGGGATGGCTTTCATGGCTGCCATCACCTCTGTGGTCTACTATCACAACATTGAGACCTCTAACTTCCCCAAGCTGCTGATCGCTCTGCTTATCTACTGGACCTTGGCCTTCATCACTAAGACCATCAAGTTCGTCAAGTTCTACGACCACGCCATCGGCTTCTCTCAGCTGCGCTTCTGCCTCACGGGGCTTCTGGTGATCCTCTACGGGATGCTGCTGCTGGTGGAGATCAATGTCATCCGGGTGCGGAGGTACATCTTCTTCAAGACGCCAAGGGAAGTGAAGCCCCCTGAGGACCTGCAGGACCTGGGGGTGCGCTTTCTGCAGCCCTTCGTGAATCTGCTGTCAAAGGGGACCTACTGGTGGATGAATGCCTTCATCAAGACTGCCCACAGGAAGCCCATCGACCTGCGGGCCATCGGGAAGCTGCCCATCGCCATGAGAGCCCTCACCAACTATCAGCGACTCTGCGCGGCCTTCGATGCCCAGGCGCGGAAAGACACGCAGAGCCAGCAGGGCGCCCGGGCCATCTGGAGGGCTCTCTGCCATGCCTTTGGGAGACGCCTGGTCCTCAGCAGCACATTCCGTATCCTGGCTGACCTGCTGGGCTTTGCTGGACCGCTCTGCATCTTTGGGATCGTGGACCACCTCGGGAAGGAGAACCATGTCTTCCAGCCCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTATCCTGGCTGACCTGCTG
60.18
GTAAGGATCCAGCGCAGGTT
60.11
180
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTATCCTGGCTGACCTGCTG
60.18
TAAGGATCCAGCGCAGGTTG
60.11
179
PCR template sequence:
ATTCCGTATCCTGGCTGACCTGCTGGGCTTTGCTGGACCGCTCTGCATCTTTGGGATCGTGGACCACCTCGGGAAGGAGAACCATGTCTTCCAGCCCAAGGATGGGGCAGCCAGAGCTCCAAGGTACACATTCACCATAGCACCTGGCTCCATTTCCCTGGCCACAACCTGCGCTGGATCCTTACCTTCATGCTGCTCTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-7b-5p(1), mmu-miR-103-3p(1), mmu-miR-15b-5p(1), mmu-miR-7a-5p(1), mmu-miR-709(1), mmu-miR-324-5p(1), mmu-miR-214-3p(1), mmu-miR-149-5p(1), mmu-miR-431-5p(1), mmu-miR-107-3p(1), mmu-miR-377-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTCCAGCCCAAGGATGGGGCAGCCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCABCC8_863_ORF_1
1.297
0.422453865
0.99593791
921
ORF sequence:
ATGCTGCTCTTTGTCCTGGTGTGTGAGATCGCTGAGGGTATCCTGTCTGATGGGGTGACAGAATCCCGCCACCTCCATTTGTACATGCCAGCTGGGATGGCTTTCATGGCTGCCATCACCTCTGTGGTCTACTATCACAACATTGAGACCTCTAACTTCCCCAAGCTGCTGATCGCTCTGCTTATCTACTGGACCTTGGCCTTCATCACTAAGACCATCAAGTTCGTCAAGTTCTACGACCACGCCATCGGCTTCTCTCAGCTGCGCTTCTGCCTCACGGGGCTTCTGGTGATCCTCTACGGGATGCTGCTGCTGGTGGAGATCAATGTCATCCGGGTGCGGAGGTACATCTTCTTCAAGACGCCAAGGGAAGTGAAGCCCCCTGAGGACCTGCAGGACCTGGGGGTGCGCTTTCTGCAGCCCTTCGTGAATCTGCTGTCAAAGGGGACCTACTGGTGGATGAATGCCTTCATCAAGACTGCCCACAGGAAGCCCATCGACCTGCGGGCCATCGGGAAGCTGCCCATCGCCATGAGAGCCCTCACCAACTATCAGCGACTCTGCGCGGCCTTCGATGCCCAGGCGCGGAAAGACACGCAGAGCCAGCAGGGCGCCCGGGCCATCTGGAGGGCTCTCTGCCATGCCTTTGGGAGACGCCTGGTCCTCAGCAGCACATTCCGTATCCTGGCTGACCTGCTGGGCTTTGCTGGACCGCTCTGCATCTTTGGGATCGTGGACCACCTCGGGAAGGAGAACCATGTCTTCCAGCCCAAGGATGGGGCAGCCAGAGCTCCAAGGTACACATTCACCATAGCACCTGGCTCCATTTCCCTGGCCACAACCTGCGCTGGATCCTTACCTTCATGCTGCTCTTTGTCCTGGTGTGTGAGATCGCTGAGGGTATCCTGTCTGATGGGGTGA
Peptide sequence:
MLLFVLVCEIAEGILSDGVTESRHLHLYMPAGMAFMAAITSVVYYHNIETSNFPKLLIALLIYWTLAFITKTIKFVKFYDHAIGFSQLRFCLTGLLVILYGMLLLVEINVIRVRRYIFFKTPREVKPPEDLQDLGVRFLQPFVNLLSKGTYWWMNAFIKTAHRKPIDLRAIGKLPIAMRALTNYQRLCAAFDAQARKDTQSQQGARAIWRALCHAFGRRLVLSSTFRILADLLGFAGPLCIFGIVDHLGKENHVFQPKDGAARAPRYTFTIAPGSISLATTCAGSLPSCCSLSWCVRSLRVSCLMG
IRESfinder result
IRESfinder score
0.309035594
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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