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mmu_circAbcc8_1359
Basic information of circular RNA
PanCircBase ID:
mmu_circAbcc8_1359
mm39_Chr. Position ID:
chr7|45762488|45773415|-
Gene name:
Abcc8
Transcript:
ENSMUST00000210655.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
11
Exon/intron indexes:
16,15,14,13,12,11,10,9,8,7,6
Exon/intron offsets:
0,1877,2709,3841,4107,4905,5891,7310,9044,9793,10828
Genomic length:
10927
Exon/intron sizes in nt:
93,158,70,167,242,100,126,138,81,85,99
Flanking exon/introns:
chr7:45759067-45762488|chr7:45773415-45774266
Splice length:
1359
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GAGCAGAGGCCCCGTAGCCTACGCATCTCAGAAACCATGGCTGCTAAATGCCACGGTGGAGGAGAACATCACCTTCGAGAGTCCCTTCAATAAGCAAAGGTACAAGATGGTCATCGAAGCCTGCTCCCTGCAGCCAGACATAGACATCTTACCCCATGGAGACCAGACTCAGATTGGGGAACGGGGCATCAACTTGTCTGGTGGTCAGCGTCAGCGAATCAGTGTAGCCCGAGCCCTCTACCAGCACACCAATGTTGTCTTCTTGGATGACCCTTTCTCAGCTCTGGATGTCCATCTGAGCGACCACCTGATGCAGGCTGGCATCCTTGAGCTGCTCCGGGATGACAAGAGGACAGTGGTCTTGGTGACCCACAAGCTACAGTACCTGCCTCATGCAGACTGGATCATTGCTATGAAGGATGGCACCATTCAGAGGGAGGGGACGCTCAAGGACTTCCAGAGGTCTGAGTGCCAGCTCTTTGAGCATTGGAAGACCCTCATGAACAGGCAAGACCAAGAGCTGGAGAAGGAGACAGTCATGGAGAGGAAAGCCCCAGAACCGTCTCAGGGCCTGCCCCGTGCCATGTCCTCAAGAGATGGCCTTCTGCTGGATGAGGACGAGGAGGAAGAGGAGGCGGCCGAGAGCGAGGAAGATGACAACTTATCTTCGGTGCTGCATCAGCGAGCCAAGATCCCATGGCGGGCCTGCACTAAGTATTTGTCCTCTGCCGGCGTCCTGCTCTTGTCCCTGCTTGTCTTCTCCCAGCTACTCAAGCACATGGTCTTGGTGGCCATTGATTACTGGCTGGCCAAGTGGACGGACAGTGCCCTGGTCCTGAGCCCTGCTGCCAGGAACTGCTCCCTCAGCCAGGAATGCGCCCTGGACCAGTCTGTCTATGCCATGGTATTCACCGTGCTCTGCAGCCTGGGAATTGCACTGTGCCTTGTCACCTCTGTCACTGTGGAGTGGACAGGACTGAAGGTGGCCAAGAGGCTGCACCGCAGCCTGCTCAATCGCATCATCCTGGCCCCCATGAGGTTCTTTGAGACCACGCCCCTGGGGAGTATCCTGAACAGATTTTCATCTGACTGTAACACCATTGACCAGCACATCCCATCCACGCTGGAGTGTCTGAGCCGATCCACTCTACTCTGTGTCTCCGCCTTGACTGTCATCTCCTACGTCACACCTGTGTTCCTCGTGGCCCTCTTACCCCTAGCTGTGGTGTGCTACTTCATCCAGAAATACTTCCGAGTGGCGTCCAGGGACCTGCAGCAGCTGGATGACACAACGCAGCTCCCTCTGCTCTCACACTTTGCTGAAACCGTGGAAGGACTCACCACCATCCGTGCCTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAGCAGCTGGATGACACAAC
59.48
GATGTTCTCCTCCACCGTGG
60.11
156
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGCAGCTGGATGACACAAC
59.48
GGTGATGTTCTCCTCCACCG
60.11
159
PCR template sequence:
CGTCCAGGGACCTGCAGCAGCTGGATGACACAACGCAGCTCCCTCTGCTCTCACACTTTGCTGAAACCGTGGAAGGACTCACCACCATCCGTGCCTTCAGGAGCAGAGGCCCCGTAGCCTACGCATCTCAGAAACCATGGCTGCTAAATGCCACGGTGGAGGAGAACATCACCTTCGAGAGTCCCTTCAATAAGCAAAGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
14
Interacting miRNAs (#binding sites)
mmu-miR-298-5p(2), mmu-miR-207(2), mmu-miR-124-3p(1), mmu-miR-221-3p(1), mmu-miR-125b-5p(1), mmu-miR-214-3p(1), mmu-miR-128-3p(1), mmu-miR-433-5p(1), mmu-miR-125a-5p(1), mmu-miR-721(1), mmu-miR-218-5p(1), mmu-miR-541-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-1199-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCGTGCCTTCAGGAGCAGAGGCCCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCABCC8_1359_ORF_1
1.2986
0.43192856
0.99999998
2610
ORF sequence:
ATGGTCATCGAAGCCTGCTCCCTGCAGCCAGACATAGACATCTTACCCCATGGAGACCAGACTCAGATTGGGGAACGGGGCATCAACTTGTCTGGTGGTCAGCGTCAGCGAATCAGTGTAGCCCGAGCCCTCTACCAGCACACCAATGTTGTCTTCTTGGATGACCCTTTCTCAGCTCTGGATGTCCATCTGAGCGACCACCTGATGCAGGCTGGCATCCTTGAGCTGCTCCGGGATGACAAGAGGACAGTGGTCTTGGTGACCCACAAGCTACAGTACCTGCCTCATGCAGACTGGATCATTGCTATGAAGGATGGCACCATTCAGAGGGAGGGGACGCTCAAGGACTTCCAGAGGTCTGAGTGCCAGCTCTTTGAGCATTGGAAGACCCTCATGAACAGGCAAGACCAAGAGCTGGAGAAGGAGACAGTCATGGAGAGGAAAGCCCCAGAACCGTCTCAGGGCCTGCCCCGTGCCATGTCCTCAAGAGATGGCCTTCTGCTGGATGAGGACGAGGAGGAAGAGGAGGCGGCCGAGAGCGAGGAAGATGACAACTTATCTTCGGTGCTGCATCAGCGAGCCAAGATCCCATGGCGGGCCTGCACTAAGTATTTGTCCTCTGCCGGCGTCCTGCTCTTGTCCCTGCTTGTCTTCTCCCAGCTACTCAAGCACATGGTCTTGGTGGCCATTGATTACTGGCTGGCCAAGTGGACGGACAGTGCCCTGGTCCTGAGCCCTGCTGCCAGGAACTGCTCCCTCAGCCAGGAATGCGCCCTGGACCAGTCTGTCTATGCCATGGTATTCACCGTGCTCTGCAGCCTGGGAATTGCACTGTGCCTTGTCACCTCTGTCACTGTGGAGTGGACAGGACTGAAGGTGGCCAAGAGGCTGCACCGCAGCCTGCTCAATCGCATCATCCTGGCCCCCATGAGGTTCTTTGAGACCACGCCCCTGGGGAGTATCCTGAACAGATTTTCATCTGACTGTAACACCATTGACCAGCACATCCCATCCACGCTGGAGTGTCTGAGCCGATCCACTCTACTCTGTGTCTCCGCCTTGACTGTCATCTCCTACGTCACACCTGTGTTCCTCGTGGCCCTCTTACCCCTAGCTGTGGTGTGCTACTTCATCCAGAAATACTTCCGAGTGGCGTCCAGGGACCTGCAGCAGCTGGATGACACAACGCAGCTCCCTCTGCTCTCACACTTTGCTGAAACCGTGGAAGGACTCACCACCATCCGTGCCTTCAGGAGCAGAGGCCCCGTAGCCTACGCATCTCAGAAACCATGGCTGCTAAATGCCACGGTGGAGGAGAACATCACCTTCGAGAGTCCCTTCAATAAGCAAAGGTACAAGATGGTCATCGAAGCCTGCTCCCTGCAGCCAGACATAGACATCTTACCCCATGGAGACCAGACTCAGATTGGGGAACGGGGCATCAACTTGTCTGGTGGTCAGCGTCAGCGAATCAGTGTAGCCCGAGCCCTCTACCAGCACACCAATGTTGTCTTCTTGGATGACCCTTTCTCAGCTCTGGATGTCCATCTGAGCGACCACCTGATGCAGGCTGGCATCCTTGAGCTGCTCCGGGATGACAAGAGGACAGTGGTCTTGGTGACCCACAAGCTACAGTACCTGCCTCATGCAGACTGGATCATTGCTATGAAGGATGGCACCATTCAGAGGGAGGGGACGCTCAAGGACTTCCAGAGGTCTGAGTGCCAGCTCTTTGAGCATTGGAAGACCCTCATGAACAGGCAAGACCAAGAGCTGGAGAAGGAGACAGTCATGGAGAGGAAAGCCCCAGAACCGTCTCAGGGCCTGCCCCGTGCCATGTCCTCAAGAGATGGCCTTCTGCTGGATGAGGACGAGGAGGAAGAGGAGGCGGCCGAGAGCGAGGAAGATGACAACTTATCTTCGGTGCTGCATCAGCGAGCCAAGATCCCATGGCGGGCCTGCACTAAGTATTTGTCCTCTGCCGGCGTCCTGCTCTTGTCCCTGCTTGTCTTCTCCCAGCTACTCAAGCACATGGTCTTGGTGGCCATTGATTACTGGCTGGCCAAGTGGACGGACAGTGCCCTGGTCCTGAGCCCTGCTGCCAGGAACTGCTCCCTCAGCCAGGAATGCGCCCTGGACCAGTCTGTCTATGCCATGGTATTCACCGTGCTCTGCAGCCTGGGAATTGCACTGTGCCTTGTCACCTCTGTCACTGTGGAGTGGACAGGACTGAAGGTGGCCAAGAGGCTGCACCGCAGCCTGCTCAATCGCATCATCCTGGCCCCCATGAGGTTCTTTGAGACCACGCCCCTGGGGAGTATCCTGAACAGATTTTCATCTGACTGTAACACCATTGACCAGCACATCCCATCCACGCTGGAGTGTCTGAGCCGATCCACTCTACTCTGTGTCTCCGCCTTGACTGTCATCTCCTACGTCACACCTGTGTTCCTCGTGGCCCTCTTACCCCTAGCTGTGGTGTGCTACTTCATCCAGAAATACTTCCGAGTGGCGTCCAGGGACCTGCAGCAGCTGGATGACACAACGCAGCTCCCTCTGCTCTCACACTTTGCTGAAACCGTGGAAGGACTCACCACCATCCGTGCCTTC
Peptide sequence:
MVIEACSLQPDIDILPHGDQTQIGERGINLSGGQRQRISVARALYQHTNVVFLDDPFSALDVHLSDHLMQAGILELLRDDKRTVVLVTHKLQYLPHADWIIAMKDGTIQREGTLKDFQRSECQLFEHWKTLMNRQDQELEKETVMERKAPEPSQGLPRAMSSRDGLLLDEDEEEEEAAESEEDDNLSSVLHQRAKIPWRACTKYLSSAGVLLLSLLVFSQLLKHMVLVAIDYWLAKWTDSALVLSPAARNCSLSQECALDQSVYAMVFTVLCSLGIALCLVTSVTVEWTGLKVAKRLHRSLLNRIILAPMRFFETTPLGSILNRFSSDCNTIDQHIPSTLECLSRSTLLCVSALTVISYVTPVFLVALLPLAVVCYFIQKYFRVASRDLQQLDDTTQLPLLSHFAETVEGLTTIRAFRSRGPVAYASQKPWLLNATVEENITFESPFNKQRYKMVIEACSLQPDIDILPHGDQTQIGERGINLSGGQRQRISVARALYQHTNVVFLDDPFSALDVHLSDHLMQAGILELLRDDKRTVVLVTHKLQYLPHADWIIAMKDGTIQREGTLKDFQRSECQLFEHWKTLMNRQDQELEKETVMERKAPEPSQGLPRAMSSRDGLLLDEDEEEEEAAESEEDDNLSSVLHQRAKIPWRACTKYLSSAGVLLLSLLVFSQLLKHMVLVAIDYWLAKWTDSALVLSPAARNCSLSQECALDQSVYAMVFTVLCSLGIALCLVTSVTVEWTGLKVAKRLHRSLLNRIILAPMRFFETTPLGSILNRFSSDCNTIDQHIPSTLECLSRSTLLCVSALTVISYVTPVFLVALLPLAVVCYFIQKYFRVASRDLQQLDDTTQLPLLSHFAETVEGLTTIRAF
IRESfinder result
IRESfinder score
0.407581082
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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