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mmu_circAbcc1_3342
Basic information of circular RNA
PanCircBase ID:
mmu_circAbcc1_3342
mm39_Chr. Position ID:
chr16|14209181|14283106|+
Gene name:
Abcc1
Transcript:
ENSMUST00000130671.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
22
Exon/intron indexes:
3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24
Exon/intron offsets:
0,2635,5033,12672,13696,19382,20131,21903,28382,31739,45189,46328,48669,52030,53975,56160,57082,66570,67706,68439,69580,73725
Genomic length:
73925
Exon/intron sizes in nt:
12,61,38,12,66,21,32,20,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr16:14207847-14209181|chr16:14283106-14283967
Splice length:
3342
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GCCTTAGGATTCTTTCTGTGGATCATCTGCTGGGCAGACCTCTTCTACTCTTTCTGGGAAAGAAGTCAGGGAGTGCTCCGAGCCCCAGTGTTACTGGTCAGCCCAACACTGCTGGGCATCACCATGCTGCTCGCCACCTTTTTGATACAGCTTGAACGGAGGAAGGGAGTCCAATCCTCGGGAATTATGCTTACTTTCTGGCTCGTAGCCCTACTCTGTGCCCTTGCCATCTTGAGATCTAAGATCATCTCTGCCTTAAAAAAGGATGCTCATGTGGACGTGTTTCGAGATTCCACGTTCTATCTGTACTTCACCCTTGTGCTTGTTCAGCTCGTGCTGTCCTGCTTCTCAGACTGCTCACCCCTGTTCTCTGAAACTGTCCATGACCGGAATCCATGCCCAGAATCCAGTGCCTCTTTCCTTTCCAGGATTACTTTCTGGTGGATTACAGGGATGATGGTGCACGGCTACCGCCAGCCCCTGGAGAGCAGTGACCTCTGGTCATTGAATAAGGAGGACACATCAGAAGAAGTGGTACCTGTGCTGGTGAATAACTGGAAGAAGGAATGTGATAAGTCAAGGAAGCAGCCTGTACGGATTGTGTATGCCCCTCCCAAAGATCCCAGCAAGCCTAAGGGAAGTTCCCAGTTGGATGTGAATGAGGAGGTGGAGGCACTGATTGTCAAGTCACCCCACAAGGATCGGGAGCCCTCTCTGTTCAAGGTGTTATACAAGACTTTTGGTCCCTACTTCCTCATGAGCTTCCTGTACAAGGCCCTTCATGACCTGATGATGTTTGCCGGCCCCAAGATCTTGGAATTGATTATCAACTTCGTGAATGACAGGGAGGCTCCCGACTGGCAGGGCTACTTTTACACAGCACTGCTGTTTGTCAGCGCCTGTCTGCAGACACTGGCACTCCACCAGTACTTTCATATCTGCTTCGTCAGTGGCATGCGCATCAAGACTGCTGTGGTGGGCGCTGTCTATCGTAAGGCTCTTTTGATCACCAATGCAGCTAGAAAATCTTCCACGGTCGGAGAGATTGTCAACCTCATGTCCGTGGATGCTCAGCGCTTCATGGACTTGGCCACGTACATTAACATGATCTGGTCAGCCCCTCTGCAAGTCATCCTAGCCCTCTACTTCCTGTGGCTGAGCCTGGGCCCTTCTGTGCTGGCTGGAGTGGCTGTGATGATTCTCATGGTACCCTTAAATGCTGTGATGGCCATGAAGACCAAGACCTACCAGGTGGCACACATGAAGAGCAAAGACAACCGAATCAAGCTGATGAACGAGATCCTCAATGGGATCAAAGTCCTCAAGCTGTACGCCTGGGAGCTGGCCTTCCAGGACAAAGTCATGAGCATCAGGCAGGAGGAGCTCAAGGTGCTGAAGAAATCTGCCTACTTGGCAGCTGTAGGCACATTCACGTGGGTGTGCACACCTTTCCTGGTGGCCCTGTCAACCTTTGCTGTCTTTGTGACTGTGGATGAGAGAAATATCCTAGATGCAAAGAAAGCCTTTGTGTCCCTAGCCCTGTTCAATATCTTGCGCTTCCCACTCAACATCCTGCCCATGGTTATCAGCAGCATTGTGCAGGCCAGCGTGTCCCTCAAGCGTCTCAGGATTTTTCTGTCTCATGAGGAGCTGGAGCCAGACAGCATTGAGCGGAGGTCGATCAAGAGTGGTGGGCGAAGGGAATAGCATCACTGTGAAGAATGCAACCTTCACTTGGGCCAGGGGTGAACCTCCCACACTGAATGGCATCACCTTCTCCATTCCTGAAGGAGCCCTTGTGGCCGTGGTGGGCCAGGTAGGCTGCGGGAAGTCATCTCTGCTGTCAGCCCTGCTGGCTGAGATGGACAAGGTGGAGGGACATGTGACTCTCAAGGGCTCCGTGGCCTACGTGCCCCAGCAGGCCTGGATTCAGAATGACTCTCTCCGAGAGAACATACTGTTTGGGCACCCCCTGCAGGAAAATTACTACAAGGCAGTTATGGAAGCCTGTGCCCTTCTTCCAGATTTGGAAATCCTGCCCAGTGGGGACCGCACAGAGATCGGTGAGAAGGGTGTGAACCTGTCAGGGGGCCAGAAGCAGCGTGTGAGCCTGGCCCGGGCTGTGTACTCTAACTCTGACATCTACCTCTTTGATGACCCCCTCTCGGCTGTGGATGCACATGTTGGGAAGCACATCTTTGAGAAGGTGGTTGGTCCCATGGGCCTACTGAAGAACAAGACACGGATCCTGGTCACCCATGGTATCAGCTACCTGCCCCAAGTGGATGTCATCATTGTCATGAGTGGCGGCAAGATCTCAGAGATGGGTTCTTATCAGGAGCTGCTAGACCGGGATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTGGCCTCGGAGGATGACAGTAAGAATGGTGTCAGTGGTTCAGGGAAGGAGTCAAAGCCGGTGGAAAATGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGAACTGCAGAAGGCTGGAGCTAAGGAGGAGACGTGGAAGCTAATGGAAGCAGACAAGGCCCAGACAGGGCAGGTGCAGCTGTCAGTGTACTGGAACTACATGAAGGCCATTGGCCTCTTCATCACCTTCTTGAGTATCTTCCTTTTCCTGTGCAACCATGTATCTGCACTGGCCTCTAACTATTGGCTGAGCCTCTGGACAGATGACCCCCCTGTTGTCAATGGGACTCAGGCGAACAGGAATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTGAGCGTACACCCAGTGGGAACCTAGTGAACCGATTCTCCAAGGAGCTGGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCATGGGTTCACTCTTCAGTGTCATTGGAGCTGTCATCATCATCCTACTGGCCACGCCCATTGCCGCAGTCATCATCCCACCCTTGGGTCTGGTTTACTTCTTTGTGCAGAGGTTCTATGTGGCTTCCTCAAGACAACTGAAGCGCCTGGAGTCTGTCAGCCGTTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGGAGTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGACCTGAAAGTAGATGAGAACCAGAAGGCCTACTACCCCAGCATTGTGGCCAACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CATCCGTGCTTTTGAGGAGC
59.55
GTAGAAGAGGTCTGCCCAGC
59.82
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CATCCGTGCTTTTGAGGAGC
59.55
TAGAAGAGGTCTGCCCAGCA
60.25
146
PCR template sequence:
TCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGACCTGAAAGTAGATGAGAACCAGAAGGCCTACTACCCCAGCATTGTGGCCAACAGGCCTTAGGATTCTTTCTGTGGATCATCTGCTGGGCAGACCTCTTCTACTCTTTCTGGGAAAGAAGTCAGGGAGTGCTCCGAGCCCCAGTGTTACTGGTCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
30
Interacting miRNAs (#binding sites)
mmu-miR-382-3p(3), mmu-miR-24-3p(2), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-199a-5p(1), mmu-miR-103-3p(1), mmu-miR-130a-3p(1), mmu-miR-298-5p(1), mmu-miR-324-5p(1), mmu-miR-143-3p(1), mmu-miR-339-5p(1), mmu-miR-214-3p(1), mmu-miR-128-3p(1), mmu-miR-149-5p(1), mmu-miR-22-3p(1), mmu-miR-130b-3p(1), mmu-miR-218-5p(1), mmu-miR-370-3p(1), mmu-miR-425-5p(1), mmu-miR-297a-5p(1), mmu-miR-107-3p(1), mmu-miR-705(1), mmu-miR-466a-5p(1), mmu-miR-1198-5p(1), mmu-miR-466p-5p(1), mmu-miR-484(1), mmu-miR-3470b(1), mmu-miR-1199-5p(1), mmu-miR-1904(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTGTGGCCAACAGGCCTTAGGATTCT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCABCC1_3342_ORF_1
1.302
0.430220695
0.999984876
1707
ORF sequence:
ATGAGGAGCTGGAGCCAGACAGCATTGAGCGGAGGTCGATCAAGAGTGGTGGGCGAAGGGAATAGCATCACTGTGAAGAATGCAACCTTCACTTGGGCCAGGGGTGAACCTCCCACACTGAATGGCATCACCTTCTCCATTCCTGAAGGAGCCCTTGTGGCCGTGGTGGGCCAGGTAGGCTGCGGGAAGTCATCTCTGCTGTCAGCCCTGCTGGCTGAGATGGACAAGGTGGAGGGACATGTGACTCTCAAGGGCTCCGTGGCCTACGTGCCCCAGCAGGCCTGGATTCAGAATGACTCTCTCCGAGAGAACATACTGTTTGGGCACCCCCTGCAGGAAAATTACTACAAGGCAGTTATGGAAGCCTGTGCCCTTCTTCCAGATTTGGAAATCCTGCCCAGTGGGGACCGCACAGAGATCGGTGAGAAGGGTGTGAACCTGTCAGGGGGCCAGAAGCAGCGTGTGAGCCTGGCCCGGGCTGTGTACTCTAACTCTGACATCTACCTCTTTGATGACCCCCTCTCGGCTGTGGATGCACATGTTGGGAAGCACATCTTTGAGAAGGTGGTTGGTCCCATGGGCCTACTGAAGAACAAGACACGGATCCTGGTCACCCATGGTATCAGCTACCTGCCCCAAGTGGATGTCATCATTGTCATGAGTGGCGGCAAGATCTCAGAGATGGGTTCTTATCAGGAGCTGCTAGACCGGGATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTGGCCTCGGAGGATGACAGTAAGAATGGTGTCAGTGGTTCAGGGAAGGAGTCAAAGCCGGTGGAAAATGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGAACTGCAGAAGGCTGGAGCTAAGGAGGAGACGTGGAAGCTAATGGAAGCAGACAAGGCCCAGACAGGGCAGGTGCAGCTGTCAGTGTACTGGAACTACATGAAGGCCATTGGCCTCTTCATCACCTTCTTGAGTATCTTCCTTTTCCTGTGCAACCATGTATCTGCACTGGCCTCTAACTATTGGCTGAGCCTCTGGACAGATGACCCCCCTGTTGTCAATGGGACTCAGGCGAACAGGAATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTGAGCGTACACCCAGTGGGAACCTAGTGAACCGATTCTCCAAGGAGCTGGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCATGGGTTCACTCTTCAGTGTCATTGGAGCTGTCATCATCATCCTACTGGCCACGCCCATTGCCGCAGTCATCATCCCACCCTTGGGTCTGGTTTACTTCTTTGTGCAGAGGTTCTATGTGGCTTCCTCAAGACAACTGAAGCGCCTGGAGTCTGTCAGCCGTTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGGAGTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGACCTGAAAGTAGATGAGAACCAGAAGGCCTACTACCCCAGCATTGTGGCCAACAGGCCTTAG
Peptide sequence:
MRSWSQTALSGGRSRVVGEGNSITVKNATFTWARGEPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVTLKGSVAYVPQQAWIQNDSLRENILFGHPLQENYYKAVMEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNSDIYLFDDPLSAVDAHVGKHIFEKVVGPMGLLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLDRDGAFAEFLRTYANAEQDLASEDDSKNGVSGSGKESKPVENGMLVTDTVGKHLQSGDTSQQHSSIAELQKAGAKEETWKLMEADKAQTGQVQLSVYWNYMKAIGLFITFLSIFLFLCNHVSALASNYWLSLWTDDPPVVNGTQANRNFRLSVYGALGILQGAAIFGYSMAVSIGGIFASRRLHLDLLYNVLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPQVIKMFMGSLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRP
IRESfinder result
IRESfinder score
0.539829249
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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