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mmu_circAbcb7_491
Basic information of circular RNA
PanCircBase ID:
mmu_circAbcb7_491
mm39_Chr. Position ID:
chrX|103346734|103349008|-
Gene name:
Abcb7
Transcript:
ENSMUST00000033695.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
7,6,5
Exon/intron offsets:
0,1003,2141
Genomic length:
2274
Exon/intron sizes in nt:
8,92,69,133
Flanking exon/introns:
chrX:103346645-103346734|chrX:103349008-103366939
Splice length:
491
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GCCATGAATATTGTGGTTCCTTTCATGTTTAAATATGCTGTAGACAGCCTCAACCAGATGTCGGGAAACATGCTGAACCTGAGTGATGCACCAAATACAGTTGCAACCATGGCAACAGCAGTTCTGATTGGCTATGGTGTATCAAGAGCCGGAGCTGCCTTTTTCAATGAAGTTCGAAATGCAGTATTTGGCAAAGTAGCACAAAATTCAATACGAAGAATAGCCAAAAATGTATTTCTCCATCTCCACAACTTGGATCTGGGTTTCCATCTGAGCAGACAGACAGGAGCTTTATCTAAGGCTATTGACAGAGGAACAAGGGGCATTAGTTTTGTCCTCAGTGCGTTAGTATTTAATCTTCTCCCTATTGTGTTTGAGATGATGCTTGTCAGTAGTGTTTTGTATTACAAATGTGGTGCCCAGTTTGCATTGGTAACCCTAGGAACACTTGGTGCATATACAGCATTCACAGTTGCAGTTACACGGTGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAATGTGGTGCCCAGTTTGC
59.89
CGACATCTGGTTGAGGCTGT
60.04
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAATGTGGTGCCCAGTTTGC
59.89
TGCATCACTCAGGTTCAGCA
59.6
173
PCR template sequence:
GTAGTGTTTTGTATTACAAATGTGGTGCCCAGTTTGCATTGGTAACCCTAGGAACACTTGGTGCATATACAGCATTCACAGTTGCAGTTACACGGTGGAGGCCATGAATATTGTGGTTCCTTTCATGTTTAAATATGCTGTAGACAGCCTCAACCAGATGTCGGGAAACATGCTGAACCTGAGTGATGCACCAAATACAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-217-5p(1), mmu-miR-382-5p(1), mmu-miR-539-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTACACGGTGGAGGCCATGAATATTG
siRNA sets
AATATTCATGGCCTCCACC, ATATTCATGGCCTCCACCG, CAATATTCATGGCCTCCAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCABCB7_491_ORF_1
1.0695
-0.038316894
0.663623405
570
ORF sequence:
ATGTGGTGCCCAGTTTGCATTGGTAACCCTAGGAACACTTGGTGCATATACAGCATTCACAGTTGCAGTTACACGGTGGAGGCCATGAATATTGTGGTTCCTTTCATGTTTAAATATGCTGTAGACAGCCTCAACCAGATGTCGGGAAACATGCTGAACCTGAGTGATGCACCAAATACAGTTGCAACCATGGCAACAGCAGTTCTGATTGGCTATGGTGTATCAAGAGCCGGAGCTGCCTTTTTCAATGAAGTTCGAAATGCAGTATTTGGCAAAGTAGCACAAAATTCAATACGAAGAATAGCCAAAAATGTATTTCTCCATCTCCACAACTTGGATCTGGGTTTCCATCTGAGCAGACAGACAGGAGCTTTATCTAAGGCTATTGACAGAGGAACAAGGGGCATTAGTTTTGTCCTCAGTGCGTTAGTATTTAATCTTCTCCCTATTGTGTTTGAGATGATGCTTGTCAGTAGTGTTTTGTATTACAAATGTGGTGCCCAGTTTGCATTGGTAACCCTAGGAACACTTGGTGCATATACAGCATTCACAGTTGCAGTTACACGGTGG
Peptide sequence:
MWCPVCIGNPRNTWCIYSIHSCSYTVEAMNIVVPFMFKYAVDSLNQMSGNMLNLSDAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLGFHLSRQTGALSKAIDRGTRGISFVLSALVFNLLPIVFEMMLVSSVLYYKCGAQFALVTLGTLGAYTAFTVAVTRW
IRESfinder result
IRESfinder score
0.695338721
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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