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mmu_circAak1_592
Basic information of circular RNA
PanCircBase ID:
mmu_circAak1_592
mm39_Chr. Position ID:
chr6|86940974|86948068|+
Gene name:
Aak1
Transcript:
ENSMUST00000089519.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
13,14,15,16
Exon/intron offsets:
0,1484,3276,6998
Genomic length:
7094
Exon/intron sizes in nt:
233,158,105,96
Flanking exon/introns:
chr6:86936256-86940974|chr6:86948068-86958277
Splice length:
592
Other database IDs:
circAtlas: mmu-Aak1_0008
circBase: hsa_circ_0120827, circAtlas: hsa-AAK1_0010
Human Ortholog IDs:
Mature spliced Sequence:
CAGATTCAAGCCCCAGTGAGACAACAGCCAAAAGTTCAGACCACTCCACCTCCAACCATCCAGGGACAGAAAGTTGGATCTCTCACTCCTCCATCATCACCCAAAACCCAACGTGCTGGGCACAGACGGATTCTCAGTGATGTAACCCACAGTGCAGTCTTTGGGGTTCCTGCCAGCAAATCAACCCAGCTGCTCCAGGCAGCTGCAGCTGAGGCCAGTCTCAATAAATCTAAGTCTGCAACCACCACTCCCTCAGGCTCTCCACGGACTTCACAGCAGAATGTCTCCAATGCTTCAGAAGGCTCCACATGGAATCCTTTTGATGACGACAACTTCTCCAAACTCACAGCTGAAGAGCTGCTAAACAAGGACTTTGCCAAGCTTGGGGAAGGAAAGCTGCCTGAGAAGCTTGGTGGCTCTGCAGAGAGTTTGATCCCAGGCTTCCAGCCAACACAAGGAGATGCCTTCACCACTCCTTCTTTTTCTGCTGGAACTGCTGAAAAAAGGAAGGGGGGCCAGGCTGTGGACTCTGGCATCCCACTTCTAAGTGTGTCTGATCCCTTCATTCCTCTTCAAGTACCTGATGCTCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGACTCTGGCATCCCACTTC
60.11
TTTCTGTCCCTGGATGGTTGG
59.92
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTGGACTCTGGCATCCCAC
60.08
TCTGTCCCTGGATGGTTGGA
60.18
140
PCR template sequence:
ACTGCTGAAAAAAGGAAGGGGGGCCAGGCTGTGGACTCTGGCATCCCACTTCTAAGTGTGTCTGATCCCTTCATTCCTCTTCAAGTACCTGATGCTCCAGCAGATTCAAGCCCCAGTGAGACAACAGCCAAAAGTTCAGACCACTCCACCTCCAACCATCCAGGGACAGAAAGTTGGATCTCTCACTCCTCCATCATCAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-33-5p(1), mmu-miR-382-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTGATGCTCCAGCAGATTCAAGCCC
siRNA sets
GAATCTGCTGGAGCATCAG, TTGAATCTGCTGGAGCATC, TGAATCTGCTGGAGCATCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAAK1_592_ORF_1
1.0444
0.209325611
0.864954274
600
ORF sequence:
ATGCTCCAGCAGATTCAAGCCCCAGTGAGACAACAGCCAAAAGTTCAGACCACTCCACCTCCAACCATCCAGGGACAGAAAGTTGGATCTCTCACTCCTCCATCATCACCCAAAACCCAACGTGCTGGGCACAGACGGATTCTCAGTGATGTAACCCACAGTGCAGTCTTTGGGGTTCCTGCCAGCAAATCAACCCAGCTGCTCCAGGCAGCTGCAGCTGAGGCCAGTCTCAATAAATCTAAGTCTGCAACCACCACTCCCTCAGGCTCTCCACGGACTTCACAGCAGAATGTCTCCAATGCTTCAGAAGGCTCCACATGGAATCCTTTTGATGACGACAACTTCTCCAAACTCACAGCTGAAGAGCTGCTAAACAAGGACTTTGCCAAGCTTGGGGAAGGAAAGCTGCCTGAGAAGCTTGGTGGCTCTGCAGAGAGTTTGATCCCAGGCTTCCAGCCAACACAAGGAGATGCCTTCACCACTCCTTCTTTTTCTGCTGGAACTGCTGAAAAAAGGAAGGGGGGCCAGGCTGTGGACTCTGGCATCCCACTTCTAAGTGTGTCTGATCCCTTCATTCCTCTTCAAGTACCTGATGCTCCA
Peptide sequence:
MLQQIQAPVRQQPKVQTTPPPTIQGQKVGSLTPPSSPKTQRAGHRRILSDVTHSAVFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRTSQQNVSNASEGSTWNPFDDDNFSKLTAEELLNKDFAKLGEGKLPEKLGGSAESLIPGFQPTQGDAFTTPSFSAGTAEKRKGGQAVDSGIPLLSVSDPFIPLQVPDAP
IRESfinder result
IRESfinder score
0.553430437
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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