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mmu_circA230057D06Rik_511
Basic information of circular RNA
PanCircBase ID:
mmu_circA230057D06Rik_511
mm39_Chr. Position ID:
chr7|61561110|61564119|-
Gene name:
A230057D06Rik
Transcript:
ENSMUST00000231418.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
5,4,3
Exon/intron offsets:
0,1844,2738
Genomic length:
3009
Exon/intron sizes in nt:
11,11,29,271
Flanking exon/introns:
chr7:61364492-61561110|chr7:61564119-61566306
Splice length:
511
Other database IDs:
CIRCpedia: MMU_CIRCpedia_25150, circAtlas: mmu-intergenic_000107
Human Ortholog IDs:
Mature spliced Sequence:
GAAACTAACATGACTATCCTCCAGAAGCCCCCAAAAGCAGCTGAAAGTGTCAGATGATGATATTTCCAGCCAAGCAATGGACAGAAGATAGTGACCCCAGTGGTTGAATTTTCAAAAGCTGGAAAAAGCTTATGAAGAAGGCAACCCTATAGGAAGACCAGCAGTCTCAACTATCCTGGACACATGAGATCTCTCAGACACTGTGCCACCAACCAGGCTGTATATACCAGCTGATATGAGGTTCCCAAGACATATACAGCAAGAATTCCTGAAAACATGTTCCTCCAGCTGAAGTCACTGCTCCTGCTTTAAGATACATTGTCCCTGTCACAGTTTTGGATCATTCATCATTTTCAAAGAAAAGGATATACTTCAGGAACCAGTATCTGACAAAACGAGGAGTCTTGCTGTCCTGTTCACTGAGTTCTCCAACTCATCCCTGAAACCACGCCTCCTCTCAGCTTCATGAGAAACTCACAGTACAGAGGCAGAGCACCACATTCAGCTGATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACTCATCCCTGAAACCACGC
60.32
TGTCCATTGCTTGGCTGGAA
60.18
163
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAAACCACGCCTCCTCTCAG
60.39
TGTCCATTGCTTGGCTGGAA
60.18
153
PCR template sequence:
CCTGTTCACTGAGTTCTCCAACTCATCCCTGAAACCACGCCTCCTCTCAGCTTCATGAGAAACTCACAGTACAGAGGCAGAGCACCACATTCAGCTGATGGAAACTAACATGACTATCCTCCAGAAGCCCCCAAAAGCAGCTGAAAGTGTCAGATGATGATATTTCCAGCCAAGCAATGGACAGAAGATAGTGACCCCAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-34a-5p(1), mmu-miR-127-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CATTCAGCTGATGGAAACTAACATGA
siRNA sets
ATGTTAGTTTCCATCAGCT,CATGTTAGTTTCCATCAGC,TCATGTTAGTTTCCATCAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.705229866
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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