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mmu_circ9530068E07Rik_512
Basic information of circular RNA
PanCircBase ID:
mmu_circ9530068E07Rik_512
mm39_Chr. Position ID:
chr11|52293872|52294384|+
Gene name:
9530068E07Rik
Transcript:
ENSMUST00000036952.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
512
Exon/intron sizes in nt:
512
Flanking exon/introns:
chr11:52287430-52293872|chr11:52294384-52297771
Splice length:
512
Other database IDs:
CIRCpedia: MMU_CIRCpedia_40325, circAtlas: mmu-9530068E07Rik_0001
circBase: hsa_circ_0127961, circAtlas: hsa-C5orf15_0001, CIRCpedia: HSA_CIRCpedia_50190
Human Ortholog IDs:
Mature spliced Sequence:
ATAGATCAGAGAATCCTCCAAACAATGCTACCGTTTCTTCTCCAGTTGTGGTGACTGCGCCTGGAAACCACACCAGCCCTTCTGTTTCCCAGATCAGCACCACACTTAGCCCAGCCAGTGCAGAGAAAAGTGGGAGCAGCTCTGCGGCGCCCACCCCCACTGCTGCTCCGTCTGCGCCCGAGGAGGAGGCTGACAGCAATGAGGACCCCAGCATGGAGGAGGAGGACCTCCTGGCTCTCAACAGCTCCCCGGCCACAGGCAAGGACACCCTGGACAATGGCGACTACGGAGAGCCGGACTACGACTGGACCACCAACCCTAGAGATGAGGAGCCTGAAGACATCAACATTGCCATCAGCAAGGAGAGCAGGCGCTTCAGGGGCTTCCAGGACTCAGTGGAGGTCGTGAAGCTCCCGCCCCCCAACAGGGAGGATAGCCATTTCTTTTTTCATCTCCTTATTTTTGCTTTCTGTGCAGCTGTTGTGTATGTTACCTATCACAACAAAAGGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCAACAGGGAGGATAGCCA
60.99
GCAGTCACCACAACTGGAGA
59.89
151
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCAACAGGGAGGATAGCCA
60.99
AGAAGGGCTGGTGTGGTTTC
60.18
176
PCR template sequence:
CCCGCCCCCCAACAGGGAGGATAGCCATTTCTTTTTTCATCTCCTTATTTTTGCTTTCTGTGCAGCTGTTGTGTATGTTACCTATCACAACAAAAGGAAGATAGATCAGAGAATCCTCCAAACAATGCTACCGTTTCTTCTCCAGTTGTGGTGACTGCGCCTGGAAACCACACCAGCCCTTCTGTTTCCCAGATCAGCAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-138-5p(1), mmu-miR-153-3p(1), mmu-miR-1199-5p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CAACAAAAGGAAGATAGATCAGAGAA
siRNA sets
TTCTCTGATCTATCTTCCT, TGATCTATCTTCCTTTTGT, ATCTATCTTCCTTTTGTTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRC9530068E07RIK_512_ORF_1
1.2809
0.319010292
0.725887814
354
ORF sequence:
ATGGAGGAGGAGGACCTCCTGGCTCTCAACAGCTCCCCGGCCACAGGCAAGGACACCCTGGACAATGGCGACTACGGAGAGCCGGACTACGACTGGACCACCAACCCTAGAGATGAGGAGCCTGAAGACATCAACATTGCCATCAGCAAGGAGAGCAGGCGCTTCAGGGGCTTCCAGGACTCAGTGGAGGTCGTGAAGCTCCCGCCCCCCAACAGGGAGGATAGCCATTTCTTTTTTCATCTCCTTATTTTTGCTTTCTGTGCAGCTGTTGTGTATGTTACCTATCACAACAAAAGGAAGATAGATCAGAGAATCCTCCAAACAATGCTACCGTTTCTTCTCCAGTTGTGGTGA
Peptide sequence:
MEEEDLLALNSSPATGKDTLDNGDYGEPDYDWTTNPRDEEPEDINIAISKESRRFRGFQDSVEVVKLPPPNREDSHFFFHLLIFAFCAAVVYVTYHNKRKIDQRILQTMLPFLLQLW
IRESfinder result
IRESfinder score
0.52060579
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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