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mmu_circ8030462N17Rik_953
Basic information of circular RNA
PanCircBase ID:
mmu_circ8030462N17Rik_953
mm39_Chr. Position ID:
chr18|77740824|77762380|-
Gene name:
8030462N17Rik
Transcript:
ENSMUST00000074653.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
3,2
Exon/intron offsets:
0,20771
Genomic length:
21556
Exon/intron sizes in nt:
1,68,785
Flanking exon/introns:
chr18:77730890-77740824|chr18:77762380-77801420
Splice length:
953
Other database IDs:
CIRCpedia: MMU_CIRCpedia_39395, circAtlas: mmu-8030462N17Rik_0006
CIRCpedia: HSA_CIRCpedia_374772
Human Ortholog IDs:
Mature spliced Sequence:
GCTGCTTCCCTGTTGCACCTTTGATATCGTTTCCTAGACTCCGTTCCATGATTTAATTTGGAATTCTGAGATGAAGATGGAGGAGGCAGTGGGAAAAGTTGAAGAACTCATTGAGTCTGCAGCCCCACCAAAAGCATCTGAACAAGAGACAGCCAAGGAAGAAGATGGCTCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGCTGACTCTACAGTTCTCTCTTCAATGCCCTGTTTGTTGATGGAACTGAGAAGGGACTCTTCAGAGTCTCAGTTAGCATCCACAGAGAGTGACAAGCCCACAACTGGCCGAGTTTATGAGAGTGACTCCTCTAATCATTGCATGCTTTCCCCTTCCTCTAGTGGCCATTTGGCTGATTCAGATACATTGTCTTCTGTTGAAGAGAATGAACCCTCGCAAGCAGAAACAACCGTGGAAGGAGATACTTCAGGAGTGTCTGGTGCCACTGTTGGACGAAAGTCTCGGCGGTCCCGTTCTGAAAGTGAAACATCTACTATGGCTGCCAAGAAAAACCGGCAATCCAGCGATAAGCAGAATGGCAGAGTCACCAAGGTTAAAGGTCATCGGAGCCAAAAGCACAAGGAGAGGATCAGACTACTGAGGCAGAAACGGGAGGCAGCTGCAAGGAAGAAGTACAACCTGCTGCAGGACAGTAGTACCAGTGACAGTGACCTGACTTGTGACTCAAGCACGAGTTCCTCAGATGATGATGACGAGGTTTCAGGGAGCAGCAAGACAATCACTGCAGAGATACCAGATGGACCTCCAGTTGTAGCTCATTATGATATGTCTGACACCAGCTCTGACCCAGAAGTGATAAATGTGGACAATTTATTGGCGGCTGCAGTAGTTCAAGAGCACAGTAATTCAGTAGGCGGCCAGAACACAGGAGCTACCTGGAGGACCAGCGAGCTTCTAGAGGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATTCAGTAGGCGGCCAGAAC
60.11
CCACTGCCTCCTCCATCTTC
59.82
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATTCAGTAGGCGGCCAGAAC
60.11
CTTTTCCCACTGCCTCCTCC
60.32
158
PCR template sequence:
GACAATTTATTGGCGGCTGCAGTAGTTCAAGAGCACAGTAATTCAGTAGGCGGCCAGAACACAGGAGCTACCTGGAGGACCAGCGAGCTTCTAGAGGCAGGCTGCTTCCCTGTTGCACCTTTGATATCGTTTCCTAGACTCCGTTCCATGATTTAATTTGGAATTCTGAGATGAAGATGGAGGAGGCAGTGGGAAAAGTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-221-3p(1), mmu-miR-18a-5p(1), mmu-miR-138-5p(1), mmu-miR-495-3p(1), mmu-miR-96-5p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-1904(1), mmu-miR-3105-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTCTAGAGGCAGGCTGCTTCCCTGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRC8030462N17RIK_953_ORF_1
0.9558
0.210872405
0.984141776
939
ORF sequence:
ATGAAGATGGAGGAGGCAGTGGGAAAAGTTGAAGAACTCATTGAGTCTGCAGCCCCACCAAAAGCATCTGAACAAGAGACAGCCAAGGAAGAAGATGGCTCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGCTGACTCTACAGTTCTCTCTTCAATGCCCTGTTTGTTGATGGAACTGAGAAGGGACTCTTCAGAGTCTCAGTTAGCATCCACAGAGAGTGACAAGCCCACAACTGGCCGAGTTTATGAGAGTGACTCCTCTAATCATTGCATGCTTTCCCCTTCCTCTAGTGGCCATTTGGCTGATTCAGATACATTGTCTTCTGTTGAAGAGAATGAACCCTCGCAAGCAGAAACAACCGTGGAAGGAGATACTTCAGGAGTGTCTGGTGCCACTGTTGGACGAAAGTCTCGGCGGTCCCGTTCTGAAAGTGAAACATCTACTATGGCTGCCAAGAAAAACCGGCAATCCAGCGATAAGCAGAATGGCAGAGTCACCAAGGTTAAAGGTCATCGGAGCCAAAAGCACAAGGAGAGGATCAGACTACTGAGGCAGAAACGGGAGGCAGCTGCAAGGAAGAAGTACAACCTGCTGCAGGACAGTAGTACCAGTGACAGTGACCTGACTTGTGACTCAAGCACGAGTTCCTCAGATGATGATGACGAGGTTTCAGGGAGCAGCAAGACAATCACTGCAGAGATACCAGATGGACCTCCAGTTGTAGCTCATTATGATATGTCTGACACCAGCTCTGACCCAGAAGTGATAAATGTGGACAATTTATTGGCGGCTGCAGTAGTTCAAGAGCACAGTAATTCAGTAGGCGGCCAGAACACAGGAGCTACCTGGAGGACCAGCGAGCTTCTAGAGGCAGGCTGCTTCCCTGTTGCACCTTTGATATCGTTTCCTAGACTCCGTTCCATGATTTAA
Peptide sequence:
MKMEEAVGKVEELIESAAPPKASEQETAKEEDGSVELESQVQKDGVADSTVLSSMPCLLMELRRDSSESQLASTESDKPTTGRVYESDSSNHCMLSPSSSGHLADSDTLSSVEENEPSQAETTVEGDTSGVSGATVGRKSRRSRSESETSTMAAKKNRQSSDKQNGRVTKVKGHRSQKHKERIRLLRQKREAAARKKYNLLQDSSTSDSDLTCDSSTSSSDDDDEVSGSSKTITAEIPDGPPVVAHYDMSDTSSDPEVINVDNLLAAAVVQEHSNSVGGQNTGATWRTSELLEAGCFPVAPLISFPRLRSMI
IRESfinder result
IRESfinder score
0.525814788
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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