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mmu_circ4933427D14Rik_691
Basic information of circular RNA
PanCircBase ID:
mmu_circ4933427D14Rik_691
mm39_Chr. Position ID:
chr11|72066028|72071452|-
Gene name:
4933427D14Rik
Transcript:
ENSMUST00000142530.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
13,12,11,10,9
Exon/intron offsets:
0,284,1458,3202,5200
Genomic length:
5424
Exon/intron sizes in nt:
90,90,12,01,67,224
Flanking exon/introns:
chr11:72060685-72066028|chr11:72071452-72080373
Splice length:
691
Other database IDs:
CIRCpedia: MMU_CIRCpedia_27990, circAtlas: mmu-4933427D14Rik_0012
circAtlas: hsa-KIAA0753_0004, CIRCpedia: HSA_CIRCpedia_375661
Human Ortholog IDs:
Mature spliced Sequence:
CTATGTGTCAGCCTGATGGGGAGCTTCAGAGGCTGGAGAGTGAACCCGATGTGCTGGATGCACATCTTCTTCCAGAAGAAGCCCCTCGTATAGAGGACAATGGTACAGACTTCAAAGACGGAACATTAACCCCAGCCAAACCACAGGCAGTGAGAAGGAAGGCTTTGACAGGGTCCATGCCGATTAGGAAGAAAGATACTGTGGAGTCAGCCAGACCACAGCAGGGACTCCACATAGCTGAAAGAAATCGACCAAACCAACCTTACAGCAAAAGCAGGTTGCAGCAGACAACAGTGTCATCCAGATTAAAAATGAACCGACAGCCTATGAAAGACCATAGGGCTCCTTGGATACCTCCAAACCCCACATCCCCACCAGCCTCTCCTAAATGTGCTGCGTGGATGAAGGTGAAGTACAGCCCCAGGGATGCTGCAAAGGAGCAGTCCCTACAGCAAGAGGATACCCACAAGGAAAGTCAGCTGAGAGGTGATGCTGAGCAAGAAGCAGCCAGGCTTTCTTGGCCAGATGCTGAGTCTTCCAAAAGACTGAAGGAACTAGAAGAATTGGAAGCCAAAGAAATGGAAAGAAAGCAAAAGCAGAGGCTCAATTGGCTTGAGGCTGAGACTTCTAGAAGAACCAAAGAGTTGGATGAACTGAAAGCTGAAGAGATGGATAGACTTCAAAAATTAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGAGGCTCAATTGGCTTG
59.83
CAGCACATCGGGTTCACTCT
60.04
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCTTGAGGCTGAGACTTC
59.68
TACGAGGGGCTTCTTCTGGA
59.96
173
PCR template sequence:
AAAAGCAGAGGCTCAATTGGCTTGAGGCTGAGACTTCTAGAAGAACCAAAGAGTTGGATGAACTGAAAGCTGAAGAGATGGATAGACTTCAAAAATTAAGCTATGTGTCAGCCTGATGGGGAGCTTCAGAGGCTGGAGAGTGAACCCGATGTGCTGGATGCACATCTTCTTCCAGAAGAAGCCCCTCGTATAGAGGACAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-7b-5p(1), mmu-miR-103-3p(1), mmu-miR-205-5p(1), mmu-miR-7a-5p(1), mmu-miR-324-5p(1), mmu-miR-10b-5p(1), mmu-miR-10a-5p(1), mmu-miR-370-3p(1), mmu-miR-107-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTCAAAAATTAAGCTATGTGTCAGCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRC4933427D14RIK_691_ORF_1
0.9432
0.160986394
0.902411534
705
ORF sequence:
ATGTGTCAGCCTGATGGGGAGCTTCAGAGGCTGGAGAGTGAACCCGATGTGCTGGATGCACATCTTCTTCCAGAAGAAGCCCCTCGTATAGAGGACAATGGTACAGACTTCAAAGACGGAACATTAACCCCAGCCAAACCACAGGCAGTGAGAAGGAAGGCTTTGACAGGGTCCATGCCGATTAGGAAGAAAGATACTGTGGAGTCAGCCAGACCACAGCAGGGACTCCACATAGCTGAAAGAAATCGACCAAACCAACCTTACAGCAAAAGCAGGTTGCAGCAGACAACAGTGTCATCCAGATTAAAAATGAACCGACAGCCTATGAAAGACCATAGGGCTCCTTGGATACCTCCAAACCCCACATCCCCACCAGCCTCTCCTAAATGTGCTGCGTGGATGAAGGTGAAGTACAGCCCCAGGGATGCTGCAAAGGAGCAGTCCCTACAGCAAGAGGATACCCACAAGGAAAGTCAGCTGAGAGGTGATGCTGAGCAAGAAGCAGCCAGGCTTTCTTGGCCAGATGCTGAGTCTTCCAAAAGACTGAAGGAACTAGAAGAATTGGAAGCCAAAGAAATGGAAAGAAAGCAAAAGCAGAGGCTCAATTGGCTTGAGGCTGAGACTTCTAGAAGAACCAAAGAGTTGGATGAACTGAAAGCTGAAGAGATGGATAGACTTCAAAAATTAAGCTATGTGTCAGCCTGA
Peptide sequence:
MCQPDGELQRLESEPDVLDAHLLPEEAPRIEDNGTDFKDGTLTPAKPQAVRRKALTGSMPIRKKDTVESARPQQGLHIAERNRPNQPYSKSRLQQTTVSSRLKMNRQPMKDHRAPWIPPNPTSPPASPKCAAWMKVKYSPRDAAKEQSLQQEDTHKESQLRGDAEQEAARLSWPDAESSKRLKELEELEAKEMERKQKQRLNWLEAETSRRTKELDELKAEEMDRLQKLSYVSA
IRESfinder result
IRESfinder score
0.373153747
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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