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mmu_circ4932438A13Rik_2280
Basic information of circular RNA
PanCircBase ID:
mmu_circ4932438A13Rik_2280
mm39_Chr. Position ID:
chr3|37007985|37029911|+
Gene name:
4932438A13Rik
Transcript:
ENSMUST00000057272.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
13
Exon/intron indexes:
33,34,35,36,37,38,39,40,41,42,43,44,45
Exon/intron offsets:
0,2802,3133,4851,5500,11038,11684,12005,13273,15309,19394,20331,21750
Genomic length:
21926
Exon/intron sizes in nt:
14,71,28,20,01,98,21,20,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr3:37006387-37007985|chr3:37029911-37037517
Splice length:
2280
Other database IDs:
circAtlas: mmu-4932438A13Rik_0097
Human Ortholog IDs:
Mature spliced Sequence:
TTATCCCCCAAGCAGGATATTCGAGGAACAAAAACTGAGCATCCTATGATAGGAACAACTAACCAGGGACAAATTCAGACAAATGTCACAACGAAGCAAGATAATGTGACAATTAAAGGACTACAGGCTAATGTGAGCATACCAAAGGTTAACTTATGCTTGTTGCAAGCTTCAGTGGAGGAGTCTCCAGCCACAGTTCCTAGTAGAAGTGTGACTCATGTGTCCCTGGTGGCTTTGTGCTTTGACAGAATTGCTACACAAGTTCGTATGAACAGAGGTGTGGTTGAAGAGACTGCAAATAATGTAGATGCTGGTAAAACATCAAATTTTGATAGATACGTTCATGCCAGCAAGATGCAGCCTCAGTCATCTGGGTCTCTTAGGTCAAATGCTGGAGCAGAGAAAGGCAAAGAGATTGCTGCCAAGTTAAATATCCATCGAGTCCATGGGCAACTTAGAGGTCTTGACACTACAGACATTGGGACCTGTGCCATCACTGCCATTCCCTTTGAAAAGTCCAAAGTTTTATTTACTCTTGAAGAATTAGATGAATTTACTTTTGTAGATGAGACAGATCAACAAGCTATCCCAGATGTAACACGGATAGGTCCCAGCCAAGAAAAATGGGGCTGGATAATGTTTGAATGTGGACTTGAAAATTTAACTATAAAAGGAGGAAGACAATCTGGTGCAGTTTTATATAACAGTTTTGGAATTATGGGTAAAAATAGTGTCACAGAAAGGGGTGGAGTGCTGACATCCAATAATTCTTCTGATTCTCCTACTGGCAGTGGCTACAATACTGATGTCTCTGATGATAACCTACCGTGTGACCGAACCAGTCCTTCCTCTGACATAAATGGAAACTCAGTGTCAGATGAGCAAGATGAAGGAGTTGAATCTGATGATTTGAAAAAAGATCTACCTCTAATGCCACCACCTCCAGATTCATGTAGCATGAAGTTGACTATTAAAGAGATTTGGTTTAGTTTTGCAGCTCCCACCAATGTGAGATCTCCTGCACATGCATTTTCTAGGCAGCTAAACCTCTTAAGCACTGCAACCCCAGCTGTTGGAGCATGGCTGGTTCCTATTGATCAACTCAAGTCATCCTTAAACAAATTAGAGACTGAGGGAACCTTGCGAATTTGTGCTGTTATGGGATGCATAATGACGGAAGCATTAGAGAATAAAAGTGTACATTTTCCTCTAAGAAGTAAATACAATAGACTTACAAAAGTTGCTCGCTTTCTTCAAGAAAATCCTTCTTGTTTATTATGTAATATTCTCCACCACTACCTGCACCAAGCAAATTACTCCATCATTGATGATGCCACGATGAGTGATGGTCTTCCTGCACTGGTAACTTTAAAGAAAGGATTGGTTGCTTTGGCACGGCAGTGGATGAAGTTCATTGTGGTAACACCTGCCTTTAAAGGAGTTAGCTTACACAGACCAGCTCAGCCCCTGAAACCTCCAGCTACTGTGGACCAGGAGCATGAAGAGGGACTTGGCCTGGATAATGGAGGTGGTCTACAAAGTGATACTAGTGCTGATGGTGCAGAATTTGAGTTTGATGCAGCCACAGTCAGTGAACATACAATGCTGCTAGAAGGAACAGCTAACCGACCACCCCCTGGGAGCTCTGGACCTGTCACTGGAGCTGAAATAATGAGGAAGCTTTCTAAAACTCACACCCATAGTGACTCTGCATTAAAAATAAAGGGCATTCACCCATATCATTCTCTGAGTTATACCAGTGGGGACACTGCTACTGATTCTCCAGTACATGTTGGACGTGCTGGGATGCCGGTAAAGGAGAGTCCAAGGAAGGAGAGCCTTCTCAGCTATCTGACTGGAAGCTTCCCAAGCCTGCACAACCTTCTGGAAGGCACTCCTCAGAGAAGTAGTGCAGCTGTGAAAAGTAGCTCCCTCACAAGAACAGGGAATACAGTAGCCACTGACATGCTGTCTGAACATCCTTTGTTATCTGAGCCATCATCTGTGAGTTTTTATAATTGGATGTCAAATGCTGTGGGAAATCGTGGAAGTGTGGTACAGGAATCTCCTGTTACAAAGTCAGGACATAACAGTCTTCCAACAGGAGTTGCACCCAATCTTCCTACAATCCCGTCAGCTTCAGATTTCAACACCGTCTTATCTAGTGACCAGAATACTCTGGATGGGACACATTCTCAGCACAGTACTAGTCAAGATGATGTGGCAGGTGTAGAAGAAGCAAACCAAGGGTTTCCTGCTGTTCAGCTAGCTGATGCACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGGACACATTCTCAGCACA
59.24
TGTCCCTGGTTAGTTGTTCCT
58.59
168
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGATGGGACACATTCTCAGCA
60.07
TGTCCCTGGTTAGTTGTTCCT
58.59
171
PCR template sequence:
GGATGGGACACATTCTCAGCACAGTACTAGTCAAGATGATGTGGCAGGTGTAGAAGAAGCAAACCAAGGGTTTCCTGCTGTTCAGCTAGCTGATGCACAGTTATCCCCCAAGCAGGATATTCGAGGAACAAAAACTGAGCATCCTATGATAGGAACAACTAACCAGGGACAAATTCAGACAAATGTCACAACGAAGCAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
29
Interacting miRNAs (#binding sites)
mmu-miR-23b-3p(1), mmu-miR-7b-5p(1), mmu-miR-181a-5p(1), mmu-miR-103-3p(1), mmu-miR-221-3p(1), mmu-miR-34a-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-7a-5p(1), mmu-miR-324-5p(1), mmu-miR-23a-3p(1), mmu-miR-24-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-22-3p(1), mmu-miR-127-5p(1), mmu-miR-194-5p(1), mmu-miR-382-5p(1), mmu-miR-183-5p(1), mmu-miR-107-3p(1), mmu-miR-680(1), mmu-miR-673-5p(1), mmu-miR-669d-5p(1), mmu-miR-3087-3p(1), mmu-miR-452-3p(1), mmu-miR-338-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AGCTGATGCACAGTTATCCCCCAAGC
siRNA sets
CTTGGGGGATAACTGTGCA, TTGGGGGATAACTGTGCAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRC4932438A13RIK_2280_ORF_1
1.0158
0.025043216
1
4515
ORF sequence:
ATGATAGGAACAACTAACCAGGGACAAATTCAGACAAATGTCACAACGAAGCAAGATAATGTGACAATTAAAGGACTACAGGCTAATGTGAGCATACCAAAGGTTAACTTATGCTTGTTGCAAGCTTCAGTGGAGGAGTCTCCAGCCACAGTTCCTAGTAGAAGTGTGACTCATGTGTCCCTGGTGGCTTTGTGCTTTGACAGAATTGCTACACAAGTTCGTATGAACAGAGGTGTGGTTGAAGAGACTGCAAATAATGTAGATGCTGGTAAAACATCAAATTTTGATAGATACGTTCATGCCAGCAAGATGCAGCCTCAGTCATCTGGGTCTCTTAGGTCAAATGCTGGAGCAGAGAAAGGCAAAGAGATTGCTGCCAAGTTAAATATCCATCGAGTCCATGGGCAACTTAGAGGTCTTGACACTACAGACATTGGGACCTGTGCCATCACTGCCATTCCCTTTGAAAAGTCCAAAGTTTTATTTACTCTTGAAGAATTAGATGAATTTACTTTTGTAGATGAGACAGATCAACAAGCTATCCCAGATGTAACACGGATAGGTCCCAGCCAAGAAAAATGGGGCTGGATAATGTTTGAATGTGGACTTGAAAATTTAACTATAAAAGGAGGAAGACAATCTGGTGCAGTTTTATATAACAGTTTTGGAATTATGGGTAAAAATAGTGTCACAGAAAGGGGTGGAGTGCTGACATCCAATAATTCTTCTGATTCTCCTACTGGCAGTGGCTACAATACTGATGTCTCTGATGATAACCTACCGTGTGACCGAACCAGTCCTTCCTCTGACATAAATGGAAACTCAGTGTCAGATGAGCAAGATGAAGGAGTTGAATCTGATGATTTGAAAAAAGATCTACCTCTAATGCCACCACCTCCAGATTCATGTAGCATGAAGTTGACTATTAAAGAGATTTGGTTTAGTTTTGCAGCTCCCACCAATGTGAGATCTCCTGCACATGCATTTTCTAGGCAGCTAAACCTCTTAAGCACTGCAACCCCAGCTGTTGGAGCATGGCTGGTTCCTATTGATCAACTCAAGTCATCCTTAAACAAATTAGAGACTGAGGGAACCTTGCGAATTTGTGCTGTTATGGGATGCATAATGACGGAAGCATTAGAGAATAAAAGTGTACATTTTCCTCTAAGAAGTAAATACAATAGACTTACAAAAGTTGCTCGCTTTCTTCAAGAAAATCCTTCTTGTTTATTATGTAATATTCTCCACCACTACCTGCACCAAGCAAATTACTCCATCATTGATGATGCCACGATGAGTGATGGTCTTCCTGCACTGGTAACTTTAAAGAAAGGATTGGTTGCTTTGGCACGGCAGTGGATGAAGTTCATTGTGGTAACACCTGCCTTTAAAGGAGTTAGCTTACACAGACCAGCTCAGCCCCTGAAACCTCCAGCTACTGTGGACCAGGAGCATGAAGAGGGACTTGGCCTGGATAATGGAGGTGGTCTACAAAGTGATACTAGTGCTGATGGTGCAGAATTTGAGTTTGATGCAGCCACAGTCAGTGAACATACAATGCTGCTAGAAGGAACAGCTAACCGACCACCCCCTGGGAGCTCTGGACCTGTCACTGGAGCTGAAATAATGAGGAAGCTTTCTAAAACTCACACCCATAGTGACTCTGCATTAAAAATAAAGGGCATTCACCCATATCATTCTCTGAGTTATACCAGTGGGGACACTGCTACTGATTCTCCAGTACATGTTGGACGTGCTGGGATGCCGGTAAAGGAGAGTCCAAGGAAGGAGAGCCTTCTCAGCTATCTGACTGGAAGCTTCCCAAGCCTGCACAACCTTCTGGAAGGCACTCCTCAGAGAAGTAGTGCAGCTGTGAAAAGTAGCTCCCTCACAAGAACAGGGAATACAGTAGCCACTGACATGCTGTCTGAACATCCTTTGTTATCTGAGCCATCATCTGTGAGTTTTTATAATTGGATGTCAAATGCTGTGGGAAATCGTGGAAGTGTGGTACAGGAATCTCCTGTTACAAAGTCAGGACATAACAGTCTTCCAACAGGAGTTGCACCCAATCTTCCTACAATCCCGTCAGCTTCAGATTTCAACACCGTCTTATCTAGTGACCAGAATACTCTGGATGGGACACATTCTCAGCACAGTACTAGTCAAGATGATGTGGCAGGTGTAGAAGAAGCAAACCAAGGGTTTCCTGCTGTTCAGCTAGCTGATGCACAGTTATCCCCCAAGCAGGATATTCGAGGAACAAAAACTGAGCATCCTATGATAGGAACAACTAACCAGGGACAAATTCAGACAAATGTCACAACGAAGCAAGATAATGTGACAATTAAAGGACTACAGGCTAATGTGAGCATACCAAAGGTTAACTTATGCTTGTTGCAAGCTTCAGTGGAGGAGTCTCCAGCCACAGTTCCTAGTAGAAGTGTGACTCATGTGTCCCTGGTGGCTTTGTGCTTTGACAGAATTGCTACACAAGTTCGTATGAACAGAGGTGTGGTTGAAGAGACTGCAAATAATGTAGATGCTGGTAAAACATCAAATTTTGATAGATACGTTCATGCCAGCAAGATGCAGCCTCAGTCATCTGGGTCTCTTAGGTCAAATGCTGGAGCAGAGAAAGGCAAAGAGATTGCTGCCAAGTTAAATATCCATCGAGTCCATGGGCAACTTAGAGGTCTTGACACTACAGACATTGGGACCTGTGCCATCACTGCCATTCCCTTTGAAAAGTCCAAAGTTTTATTTACTCTTGAAGAATTAGATGAATTTACTTTTGTAGATGAGACAGATCAACAAGCTATCCCAGATGTAACACGGATAGGTCCCAGCCAAGAAAAATGGGGCTGGATAATGTTTGAATGTGGACTTGAAAATTTAACTATAAAAGGAGGAAGACAATCTGGTGCAGTTTTATATAACAGTTTTGGAATTATGGGTAAAAATAGTGTCACAGAAAGGGGTGGAGTGCTGACATCCAATAATTCTTCTGATTCTCCTACTGGCAGTGGCTACAATACTGATGTCTCTGATGATAACCTACCGTGTGACCGAACCAGTCCTTCCTCTGACATAAATGGAAACTCAGTGTCAGATGAGCAAGATGAAGGAGTTGAATCTGATGATTTGAAAAAAGATCTACCTCTAATGCCACCACCTCCAGATTCATGTAGCATGAAGTTGACTATTAAAGAGATTTGGTTTAGTTTTGCAGCTCCCACCAATGTGAGATCTCCTGCACATGCATTTTCTAGGCAGCTAAACCTCTTAAGCACTGCAACCCCAGCTGTTGGAGCATGGCTGGTTCCTATTGATCAACTCAAGTCATCCTTAAACAAATTAGAGACTGAGGGAACCTTGCGAATTTGTGCTGTTATGGGATGCATAATGACGGAAGCATTAGAGAATAAAAGTGTACATTTTCCTCTAAGAAGTAAATACAATAGACTTACAAAAGTTGCTCGCTTTCTTCAAGAAAATCCTTCTTGTTTATTATGTAATATTCTCCACCACTACCTGCACCAAGCAAATTACTCCATCATTGATGATGCCACGATGAGTGATGGTCTTCCTGCACTGGTAACTTTAAAGAAAGGATTGGTTGCTTTGGCACGGCAGTGGATGAAGTTCATTGTGGTAACACCTGCCTTTAAAGGAGTTAGCTTACACAGACCAGCTCAGCCCCTGAAACCTCCAGCTACTGTGGACCAGGAGCATGAAGAGGGACTTGGCCTGGATAATGGAGGTGGTCTACAAAGTGATACTAGTGCTGATGGTGCAGAATTTGAGTTTGATGCAGCCACAGTCAGTGAACATACAATGCTGCTAGAAGGAACAGCTAACCGACCACCCCCTGGGAGCTCTGGACCTGTCACTGGAGCTGAAATAATGAGGAAGCTTTCTAAAACTCACACCCATAGTGACTCTGCATTAAAAATAAAGGGCATTCACCCATATCATTCTCTGAGTTATACCAGTGGGGACACTGCTACTGATTCTCCAGTACATGTTGGACGTGCTGGGATGCCGGTAAAGGAGAGTCCAAGGAAGGAGAGCCTTCTCAGCTATCTGACTGGAAGCTTCCCAAGCCTGCACAACCTTCTGGAAGGCACTCCTCAGAGAAGTAGTGCAGCTGTGAAAAGTAGCTCCCTCACAAGAACAGGGAATACAGTAGCCACTGACATGCTGTCTGAACATCCTTTGTTATCTGAGCCATCATCTGTGAGTTTTTATAATTGGATGTCAAATGCTGTGGGAAATCGTGGAAGTGTGGTACAGGAATCTCCTGTTACAAAGTCAGGACATAACAGTCTTCCAACAGGAGTTGCACCCAATCTTCCTACAATCCCGTCAGCTTCAGATTTCAACACCGTCTTATCTAGTGACCAGAATACTCTGGATGGGACACATTCTCAGCACAGTACTAGTCAAGATGATGTGGCAGGTGTAGAAGAAGCAAACCAAGGGTTTCCTGCTGTTCAGCTAGCTGATGCACAG
Peptide sequence:
MIGTTNQGQIQTNVTTKQDNVTIKGLQANVSIPKVNLCLLQASVEESPATVPSRSVTHVSLVALCFDRIATQVRMNRGVVEETANNVDAGKTSNFDRYVHASKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFTFVDETDQQAIPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNSFGIMGKNSVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDINGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPAHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIDDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPPATVDQEHEEGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRAGMPVKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNTVATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQLSPKQDIRGTKTEHPMIGTTNQGQIQTNVTTKQDNVTIKGLQANVSIPKVNLCLLQASVEESPATVPSRSVTHVSLVALCFDRIATQVRMNRGVVEETANNVDAGKTSNFDRYVHASKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFTFVDETDQQAIPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNSFGIMGKNSVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDINGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPAHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIDDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPPATVDQEHEEGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRAGMPVKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNTVATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQ
IRESfinder result
IRESfinder score
0.621706213
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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