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mmu_circ2700049A03Rik_1074
Basic information of circular RNA
PanCircBase ID:
mmu_circ2700049A03Rik_1074
mm39_Chr. Position ID:
chr12|71206964|71217480|+
Gene name:
2700049A03Rik
Transcript:
ENSMUST00000149564.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
11,12,13,14,15,16
Exon/intron offsets:
0,933,2385,4193,6875,10328
Genomic length:
10516
Exon/intron sizes in nt:
218,73,225,175,195,188
Flanking exon/introns:
chr12:71205731-71206964|chr12:71217480-71219902
Splice length:
1074
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ATAAAGCAATCTCCAGTTACCTTGAGGCTTTCAGATCATCCGCATAATCCTGCCTTGCTCCAGACAACCAATACAAGGTCTGTCTTGAAAGATGCTGCGAAGATTCTGAGAGGAGTACAAAACAATAAAAAAGTACTAGAAGAAAACCTGGAAGCTATCGTTCGTGCAAAGGATGGAGCTGCTATGTATTCATTTATCAATGCTTTAGCTACCAATAGAGAGATGTCAGAGAAAATTAGGATCAGAAAGCAGGTAGATGAATGGATTAAAATCATTTCAGCAGAAATCCAGGATGAACTTATGAGAAAAGATTATGAACAAAAGAGATTTGATCCAAAGAATCAAAGAAACAAGAAAGCTCTAACTATGAGTAGAGATATTAAAGCCAATAACCAAGAAAAAACGGTGAACAGATCTGTAATTCCAAGAAGCCATTATCAAAAGCAAACCCAGGAGCAGTTTACAAGTCCACCTGTGAGGAACTTGCCTGCCTCCGGCCCGCAGAAAGAGAGGAGTGGCCTCTTGAAGTCAGCCACAACGTTGCAAGACGAGGATTATATGTTACAGATATATGGGAAGCCAGTTTATCAGGGCCACCGCAGCACTCTTAAGAAAGGACCGTATCTCAGATTCAGTTCTCCGTCTCCTAAGGCCAAGCCACAGAGGCCAAGGGTGATAGAGCTAGTGAAAGGCACTAAAGTCAAGTCAGCAAAAACACAAACTGACTTTCATGCTGCATCACGTATGAAAATGGATTCTAAAATACAGCATCCCATCACCGCACTACCTCATGCTGATCAGCAGTATATGGTCAGCCCAAGCAGAGAAATGCCTACTGTTTCAGGTACCCTGGAAGGTCATCTAATTCCTATGGCAATCCTCTTAGGACAAACCCAAAGCAATAGTGACTCCATGCCACCTGCTGGAGTCACTGTAAACAAGCCACGCCCCGTGACTGTGACCACTTCTATTCCTCCGGCATCTCGAAAAGGGAACGCTGGAGTCAAGAAACCCAACGTAGCCATTGTAGAGATGAAATCAGAGAAGAAGGACCCTCCCCAGCTCTCTGTACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGAACGCTGGAGTCAAGAA
59.97
GTCTGGAGCAAGGCAGGATT
60.03
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGGGAACGCTGGAGTCAAG
59.96
GTCTGGAGCAAGGCAGGATT
60.03
151
PCR template sequence:
TCCGGCATCTCGAAAAGGGAACGCTGGAGTCAAGAAACCCAACGTAGCCATTGTAGAGATGAAATCAGAGAAGAAGGACCCTCCCCAGCTCTCTGTACAGATAAAGCAATCTCCAGTTACCTTGAGGCTTTCAGATCATCCGCATAATCCTGCCTTGCTCCAGACAACCAATACAAGGTCTGTCTTGAAAGATGCTGCGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-let-7a-5p(1), mmu-miR-103-3p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-135a-5p(1), mmu-miR-223-3p(1), mmu-let-7c-5p(1), mmu-miR-146a-5p(1), mmu-miR-184-3p(1), mmu-miR-203-3p(1), mmu-let-7d-5p(1), mmu-miR-431-5p(1), mmu-miR-107-3p(1), mmu-miR-466d-3p(1), mmu-miR-98-5p(1), mmu-miR-129-5p(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GCTCTCTGTACAGATAAAGCAATCTC
siRNA sets
TTGCTTTATCTGTACAGAG, GATTGCTTTATCTGTACAG, ATTGCTTTATCTGTACAGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRC2700049A03RIK_1074_ORF_1
0.99
0.089903247
0.999984818
1965
ORF sequence:
ATGTATTCATTTATCAATGCTTTAGCTACCAATAGAGAGATGTCAGAGAAAATTAGGATCAGAAAGCAGGTAGATGAATGGATTAAAATCATTTCAGCAGAAATCCAGGATGAACTTATGAGAAAAGATTATGAACAAAAGAGATTTGATCCAAAGAATCAAAGAAACAAGAAAGCTCTAACTATGAGTAGAGATATTAAAGCCAATAACCAAGAAAAAACGGTGAACAGATCTGTAATTCCAAGAAGCCATTATCAAAAGCAAACCCAGGAGCAGTTTACAAGTCCACCTGTGAGGAACTTGCCTGCCTCCGGCCCGCAGAAAGAGAGGAGTGGCCTCTTGAAGTCAGCCACAACGTTGCAAGACGAGGATTATATGTTACAGATATATGGGAAGCCAGTTTATCAGGGCCACCGCAGCACTCTTAAGAAAGGACCGTATCTCAGATTCAGTTCTCCGTCTCCTAAGGCCAAGCCACAGAGGCCAAGGGTGATAGAGCTAGTGAAAGGCACTAAAGTCAAGTCAGCAAAAACACAAACTGACTTTCATGCTGCATCACGTATGAAAATGGATTCTAAAATACAGCATCCCATCACCGCACTACCTCATGCTGATCAGCAGTATATGGTCAGCCCAAGCAGAGAAATGCCTACTGTTTCAGGTACCCTGGAAGGTCATCTAATTCCTATGGCAATCCTCTTAGGACAAACCCAAAGCAATAGTGACTCCATGCCACCTGCTGGAGTCACTGTAAACAAGCCACGCCCCGTGACTGTGACCACTTCTATTCCTCCGGCATCTCGAAAAGGGAACGCTGGAGTCAAGAAACCCAACGTAGCCATTGTAGAGATGAAATCAGAGAAGAAGGACCCTCCCCAGCTCTCTGTACAGATAAAGCAATCTCCAGTTACCTTGAGGCTTTCAGATCATCCGCATAATCCTGCCTTGCTCCAGACAACCAATACAAGGTCTGTCTTGAAAGATGCTGCGAAGATTCTGAGAGGAGTACAAAACAATAAAAAAGTACTAGAAGAAAACCTGGAAGCTATCGTTCGTGCAAAGGATGGAGCTGCTATGTATTCATTTATCAATGCTTTAGCTACCAATAGAGAGATGTCAGAGAAAATTAGGATCAGAAAGCAGGTAGATGAATGGATTAAAATCATTTCAGCAGAAATCCAGGATGAACTTATGAGAAAAGATTATGAACAAAAGAGATTTGATCCAAAGAATCAAAGAAACAAGAAAGCTCTAACTATGAGTAGAGATATTAAAGCCAATAACCAAGAAAAAACGGTGAACAGATCTGTAATTCCAAGAAGCCATTATCAAAAGCAAACCCAGGAGCAGTTTACAAGTCCACCTGTGAGGAACTTGCCTGCCTCCGGCCCGCAGAAAGAGAGGAGTGGCCTCTTGAAGTCAGCCACAACGTTGCAAGACGAGGATTATATGTTACAGATATATGGGAAGCCAGTTTATCAGGGCCACCGCAGCACTCTTAAGAAAGGACCGTATCTCAGATTCAGTTCTCCGTCTCCTAAGGCCAAGCCACAGAGGCCAAGGGTGATAGAGCTAGTGAAAGGCACTAAAGTCAAGTCAGCAAAAACACAAACTGACTTTCATGCTGCATCACGTATGAAAATGGATTCTAAAATACAGCATCCCATCACCGCACTACCTCATGCTGATCAGCAGTATATGGTCAGCCCAAGCAGAGAAATGCCTACTGTTTCAGGTACCCTGGAAGGTCATCTAATTCCTATGGCAATCCTCTTAGGACAAACCCAAAGCAATAGTGACTCCATGCCACCTGCTGGAGTCACTGTAAACAAGCCACGCCCCGTGACTGTGACCACTTCTATTCCTCCGGCATCTCGAAAAGGGAACGCTGGAGTCAAGAAACCCAACGTAGCCATTGTAGAGATGAAATCAGAGAAGAAGGACCCTCCCCAGCTCTCTGTACAG
Peptide sequence:
MYSFINALATNREMSEKIRIRKQVDEWIKIISAEIQDELMRKDYEQKRFDPKNQRNKKALTMSRDIKANNQEKTVNRSVIPRSHYQKQTQEQFTSPPVRNLPASGPQKERSGLLKSATTLQDEDYMLQIYGKPVYQGHRSTLKKGPYLRFSSPSPKAKPQRPRVIELVKGTKVKSAKTQTDFHAASRMKMDSKIQHPITALPHADQQYMVSPSREMPTVSGTLEGHLIPMAILLGQTQSNSDSMPPAGVTVNKPRPVTVTTSIPPASRKGNAGVKKPNVAIVEMKSEKKDPPQLSVQIKQSPVTLRLSDHPHNPALLQTTNTRSVLKDAAKILRGVQNNKKVLEENLEAIVRAKDGAAMYSFINALATNREMSEKIRIRKQVDEWIKIISAEIQDELMRKDYEQKRFDPKNQRNKKALTMSRDIKANNQEKTVNRSVIPRSHYQKQTQEQFTSPPVRNLPASGPQKERSGLLKSATTLQDEDYMLQIYGKPVYQGHRSTLKKGPYLRFSSPSPKAKPQRPRVIELVKGTKVKSAKTQTDFHAASRMKMDSKIQHPITALPHADQQYMVSPSREMPTVSGTLEGHLIPMAILLGQTQSNSDSMPPAGVTVNKPRPVTVTTSIPPASRKGNAGVKKPNVAIVEMKSEKKDPPQLSVQ
IRESfinder result
IRESfinder score
0.467823779
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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