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mmu_circ2610507B11Rik_833
Basic information of circular RNA
PanCircBase ID:
mmu_circ2610507B11Rik_833
mm39_Chr. Position ID:
chr11|78155289|78158068|+
Gene name:
2610507B11Rik
Transcript:
ENSMUST00000010421.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
5,6,7,8,9,10,11
Exon/intron offsets:
0,715,1109,1887,2131,2472,2633
Genomic length:
2779
Exon/intron sizes in nt:
11,96,11,90,12,41,25,60,000
Flanking exon/introns:
chr11:78154885-78155289|chr11:78158068-78158924
Splice length:
833
Other database IDs:
circAtlas: mmu-2610507B11Rik_0005
circAtlas: hsa-KIAA0100_0013
Human Ortholog IDs:
Mature spliced Sequence:
CTATTCTCCATTCATGTAGATGCCATAAACATCATGGTTCTTAAGGTGGCTACCTCTGAGTCCTTGTGGCACATCCAGATCAGTAGAAGCAGATTTCTTTTGGACAGTGATGGGAAGAGTCTCATCTGTAAAGTGAACCTATCAAAGATCAATAGCAAAGTCCTGAAGAGTGGTCAGCTGGAGGATACATGTCTGGTAGAGCTCTCACTGGCCCTGGACCTGCGCCTACAGGTCAGCGTCAGCAGTTGGCATCTGACGGCTGTCACTGTGGATGTGTGGACACTCCATGCTGAGCTGCATGAAGGTCTCTTCCATAGTCAGCTACTGTGTCATGCCCCAGGCCGGATTTCCAAATCAGTTTCTTGTTCAGATTTGACTGAGAACTTTGCTGAACCAACTCTGCCTGGCCTATACCTCCTCCAGCGGCTGCCAGACCAAGTCAAGGTGAAGATGGAGAACACAAGTGTGGTGTTGTCTATGAACAGTCAAAAACGGCACTTGACTTGGACACTGAAGCTGCTGCATTTCCTGTACCACCGTGATGAGGACCAACTGCCGCTTCGAAGCTTCACAGCAAACTATGATATGGCACAGATGAGCACTGAACTCCTATTGGAAGATGGGTTGTTGCTGTCCCAGAGTCGCCAACGAATTGTCTGCCTCAACTCCCTCAAGGCTAATGTGCAGGTGACCACCATCGACCTCTCAGCTTCTCTAGTTCTGAACACCTGTATCATTCATTACCGACACCAGGAGTTCTCTCACTGGCTCCTTATGCTAGCACTGGAGACCCAAGGAGCCAGTTCACCTGATCTTAAACAAAGAAAGAAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCGACACCAGGAGTTCTCT
60.18
GGATGTGCCACAAGGACTCA
59.96
167
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCGACACCAGGAGTTCTCT
60.18
TGGATGTGCCACAAGGACTC
59.96
168
PCR template sequence:
TCATTCATTACCGACACCAGGAGTTCTCTCACTGGCTCCTTATGCTAGCACTGGAGACCCAAGGAGCCAGTTCACCTGATCTTAAACAAAGAAAGAAAAGCTATTCTCCATTCATGTAGATGCCATAAACATCATGGTTCTTAAGGTGGCTACCTCTGAGTCCTTGTGGCACATCCAGATCAGTAGAAGCAGATTTCTTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-322-5p(1), mmu-miR-128-3p(1), mmu-miR-149-5p(1), mmu-miR-127-5p(1), mmu-miR-680(1), mmu-miR-669d-5p(1), mmu-miR-1904(1), mmu-miR-202-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AAAGAAAGAAAAGCTATTCTCCATTC
siRNA sets
GAATGGAGAATAGCTTTTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRC2610507B11RIK_833_ORF_1
1.2626
0.20544348
0.97846066
819
ORF sequence:
ATGGTTCTTAAGGTGGCTACCTCTGAGTCCTTGTGGCACATCCAGATCAGTAGAAGCAGATTTCTTTTGGACAGTGATGGGAAGAGTCTCATCTGTAAAGTGAACCTATCAAAGATCAATAGCAAAGTCCTGAAGAGTGGTCAGCTGGAGGATACATGTCTGGTAGAGCTCTCACTGGCCCTGGACCTGCGCCTACAGGTCAGCGTCAGCAGTTGGCATCTGACGGCTGTCACTGTGGATGTGTGGACACTCCATGCTGAGCTGCATGAAGGTCTCTTCCATAGTCAGCTACTGTGTCATGCCCCAGGCCGGATTTCCAAATCAGTTTCTTGTTCAGATTTGACTGAGAACTTTGCTGAACCAACTCTGCCTGGCCTATACCTCCTCCAGCGGCTGCCAGACCAAGTCAAGGTGAAGATGGAGAACACAAGTGTGGTGTTGTCTATGAACAGTCAAAAACGGCACTTGACTTGGACACTGAAGCTGCTGCATTTCCTGTACCACCGTGATGAGGACCAACTGCCGCTTCGAAGCTTCACAGCAAACTATGATATGGCACAGATGAGCACTGAACTCCTATTGGAAGATGGGTTGTTGCTGTCCCAGAGTCGCCAACGAATTGTCTGCCTCAACTCCCTCAAGGCTAATGTGCAGGTGACCACCATCGACCTCTCAGCTTCTCTAGTTCTGAACACCTGTATCATTCATTACCGACACCAGGAGTTCTCTCACTGGCTCCTTATGCTAGCACTGGAGACCCAAGGAGCCAGTTCACCTGATCTTAAACAAAGAAAGAAAAGCTATTCTCCATTCATGTAG
Peptide sequence:
MVLKVATSESLWHIQISRSRFLLDSDGKSLICKVNLSKINSKVLKSGQLEDTCLVELSLALDLRLQVSVSSWHLTAVTVDVWTLHAELHEGLFHSQLLCHAPGRISKSVSCSDLTENFAEPTLPGLYLLQRLPDQVKVKMENTSVVLSMNSQKRHLTWTLKLLHFLYHRDEDQLPLRSFTANYDMAQMSTELLLEDGLLLSQSRQRIVCLNSLKANVQVTTIDLSASLVLNTCIIHYRHQEFSHWLLMLALETQGASSPDLKQRKKSYSPFM
IRESfinder result
IRESfinder score
0.588509132
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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