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mmu_circ2610507B11Rik_305
Basic information of circular RNA
PanCircBase ID:
mmu_circ2610507B11Rik_305
mm39_Chr. Position ID:
chr11|78174925|78175686|+
Gene name:
2610507B11Rik
Transcript:
ENSMUST00000010421.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
28,29
Exon/intron offsets:
0,639
Genomic length:
761
Exon/intron sizes in nt:
183,122
Flanking exon/introns:
chr11:78173984-78174925|chr11:78175686-78176263
Splice length:
305
Other database IDs:
CIRCpedia: MMU_CIRCpedia_29857, circAtlas: mmu-2610507B11Rik_0004
circBase: hsa_circ_0106447, circAtlas: hsa-KIAA0100_0006
Human Ortholog IDs:
Mature spliced Sequence:
ACTGGAACCAGCCAGCGGAAGCCCAGCAAGCCCAGCAAGTCCAGAGGATCATTTCACGTTGTAATTGCCGGATGTACTATATTAGCTACAGCCATGACATTGATCCTGAGCTAGCAACTCAGATTAAGCCACCTGAGGTTCATGAGAACCAGGAAAAGGAGGATCTCTTAAAGAAGCAGGAAGGGGCTGTGGATACTTTTACTCTCATCCACCACGAATTGGAAATTTCTACCAACCCAGCTCAGTATGCTATGATTCTGGACATTGTCAACAACCTGCTTCTCCACGTAGAACCCAAGCGGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCAACCCAGCTCAGTATGC
60.04
ACATCCGGCAATTACAACGTG
59.53
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAACCCAGCTCAGTATGCT
59.75
ACATCCGGCAATTACAACGTG
59.53
149
PCR template sequence:
CATCCACCACGAATTGGAAATTTCTACCAACCCAGCTCAGTATGCTATGATTCTGGACATTGTCAACAACCTGCTTCTCCACGTAGAACCCAAGCGGAAGACTGGAACCAGCCAGCGGAAGCCCAGCAAGCCCAGCAAGTCCAGAGGATCATTTCACGTTGTAATTGCCGGATGTACTATATTAGCTACAGCCATGACAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-182-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ACCCAAGCGGAAGACTGGAACCAGCC
siRNA sets
CTGGTTCCAGTCTTCCGCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRC2610507B11RIK_305_ORF_1
1.1566
0.251185436
0.606295195
348
ORF sequence:
ATGTACTATATTAGCTACAGCCATGACATTGATCCTGAGCTAGCAACTCAGATTAAGCCACCTGAGGTTCATGAGAACCAGGAAAAGGAGGATCTCTTAAAGAAGCAGGAAGGGGCTGTGGATACTTTTACTCTCATCCACCACGAATTGGAAATTTCTACCAACCCAGCTCAGTATGCTATGATTCTGGACATTGTCAACAACCTGCTTCTCCACGTAGAACCCAAGCGGAAGACTGGAACCAGCCAGCGGAAGCCCAGCAAGCCCAGCAAGTCCAGAGGATCATTTCACGTTGTAATTGCCGGATGTACTATATTAGCTACAGCCATGACATTGATCCTGAGCTAG
Peptide sequence:
MYYISYSHDIDPELATQIKPPEVHENQEKEDLLKKQEGAVDTFTLIHHELEISTNPAQYAMILDIVNNLLLHVEPKRKTGTSQRKPSKPSKSRGSFHVVIAGCTILATAMTLILS
IRESfinder result
IRESfinder score
0.535151911
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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